RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 GNAI2P04899 355 aa21.73■■□□□ 1.07
CLDN4-201ENST00000340958 NBPF14Q5TI25 921 aa21.73■■□□□ 1.07
CLDN4-201ENST00000340958 NBPF10Q6P3W6 841 aaKnown RBP21.73■■□□□ 1.07
CLDN4-201ENST00000340958 NBPF15Q8N660 670 aa21.73■■□□□ 1.07
CLDN4-201ENST00000340958 NPM2Q86SE8 214 aaKnown RBP21.73■■□□□ 1.07
CLDN4-201ENST00000340958 UBTFL1P0CB47 393 aaPredicted RBP21.72■■□□□ 1.07
CLDN4-201ENST00000340958 ATP6V1AP38606 617 aa21.72■■□□□ 1.07
CLDN4-201ENST00000340958 ARXQ96QS3 562 aa21.72■■□□□ 1.07
CLDN4-201ENST00000340958 C9orf78Q9NZ63 289 aaPredicted RBP21.71■■□□□ 1.07
CLDN4-201ENST00000340958 ATP10DQ9P241 1426 aa21.71■■□□□ 1.07
CLDN4-201ENST00000340958 PALLDQ8WX93 1383 aa21.71■■□□□ 1.07
CLDN4-201ENST00000340958 PSDA5PKW4 1024 aaPredicted RBP21.71■■□□□ 1.07
CLDN4-201ENST00000340958 RPAP2Q8IXW5 612 aaPredicted RBP21.71■■□□□ 1.07
CLDN4-201ENST00000340958 LOC102724428A0A0B4J2F2 783 aa21.7■■□□□ 1.06
CLDN4-201ENST00000340958 ALDH1L1O75891 902 aa21.7■■□□□ 1.06
CLDN4-201ENST00000340958 SIK1P57059 783 aa21.7■■□□□ 1.06
CLDN4-201ENST00000340958 LRP10Q7Z4F1 713 aa21.7■■□□□ 1.06
CLDN4-201ENST00000340958 LINS1Q8NG48 757 aa21.7■■□□□ 1.06
CLDN4-201ENST00000340958 PLBD2Q8NHP8 589 aa21.7■■□□□ 1.06
CLDN4-201ENST00000340958 MYD88Q99836 296 aa21.7■■□□□ 1.06
CLDN4-201ENST00000340958 LRRC4BQ9NT99 713 aa21.7■■□□□ 1.06
CLDN4-201ENST00000340958 SRCAPQ6ZRS2 3230 aa21.7■■□□□ 1.06
CLDN4-201ENST00000340958 R3HDM1Q15032 1099 aaKnown RBP21.69■■□□□ 1.06
CLDN4-201ENST00000340958 SLC4A9Q96Q91 983 aa21.69■■□□□ 1.06
CLDN4-201ENST00000340958 USP44Q9H0E7 712 aa21.69■■□□□ 1.06
CLDN4-201ENST00000340958 ANO8Q9HCE9 1232 aaPredicted RBP21.69■■□□□ 1.06
CLDN4-201ENST00000340958 CYP19A1P11511 503 aaPredicted RBP21.69■■□□□ 1.06
CLDN4-201ENST00000340958 KCNQ4P56696 695 aa21.69■■□□□ 1.06
CLDN4-201ENST00000340958 CWF19L2Q2TBE0 894 aaKnown RBP21.69■■□□□ 1.06
CLDN4-201ENST00000340958 METTL22Q9BUU2 404 aaPredicted RBP21.69■■□□□ 1.06
CLDN4-201ENST00000340958 HMMRO75330 724 aa21.68■■□□□ 1.06
CLDN4-201ENST00000340958 KIF6Q6ZMV9 814 aa21.68■■□□□ 1.06
CLDN4-201ENST00000340958 ANKRD44Q8N8A2 993 aa21.68■■□□□ 1.06
CLDN4-201ENST00000340958 RGS3P49796 1198 aa21.67■■□□□ 1.06
CLDN4-201ENST00000340958 CEP85Q6P2H3 762 aa21.67■■□□□ 1.06
CLDN4-201ENST00000340958 SKAP1Q86WV1 359 aa21.67■■□□□ 1.06
CLDN4-201ENST00000340958 HDAC5Q9UQL6 1122 aa21.67■■□□□ 1.06
CLDN4-201ENST00000340958 SLC27A3Q5K4L6 730 aa21.66■■□□□ 1.06
CLDN4-201ENST00000340958 TTLL7Q6ZT98 887 aa21.66■■□□□ 1.06
CLDN4-201ENST00000340958 LRRFIP2Q9Y608 721 aaKnown RBP21.66■■□□□ 1.06
CLDN4-201ENST00000340958 TAF1LQ8IZX4 1826 aa21.66■■□□□ 1.06
CLDN4-201ENST00000340958 GCC1Q96CN9 775 aa21.66■■□□□ 1.06
CLDN4-201ENST00000340958 ZBTB3Q9H5J0 574 aa21.66■■□□□ 1.06
CLDN4-201ENST00000340958 SIRT2Q8IXJ6 389 aa21.65■■□□□ 1.06
CLDN4-201ENST00000340958 CCNL1Q9UK58 526 aaPredicted RBP21.65■■□□□ 1.06
CLDN4-201ENST00000340958 PDZRN3Q9UPQ7 1066 aa21.65■■□□□ 1.06
CLDN4-201ENST00000340958 NBPF7P0C2Y1 421 aaPredicted RBP21.64■■□□□ 1.06
CLDN4-201ENST00000340958 ZBTB47Q9UFB7 747 aaPredicted RBP21.64■■□□□ 1.06
CLDN4-201ENST00000340958 ZBTB1Q9Y2K1 713 aa21.64■■□□□ 1.05
CLDN4-201ENST00000340958 N4BP2Q86UW6 1770 aaPredicted RBP21.63■■□□□ 1.05
CLDN4-201ENST00000340958 NEURL1BA8MQ27 555 aa21.63■■□□□ 1.05
CLDN4-201ENST00000340958 SMC5Q8IY18 1101 aa21.63■■□□□ 1.05
CLDN4-201ENST00000340958 TSHZ2Q9NRE2 1034 aa21.63■■□□□ 1.05
CLDN4-201ENST00000340958 ATP5J2-PTCD1G3V325 749 aa21.62■■□□□ 1.05
CLDN4-201ENST00000340958 GRM8O00222 908 aa21.62■■□□□ 1.05
CLDN4-201ENST00000340958 IGKV5-2P06315 115 aa21.62■■□□□ 1.05
CLDN4-201ENST00000340958 CCDC87Q9NVE4 849 aa21.62■■□□□ 1.05
CLDN4-201ENST00000340958 TUBGCP6Q96RT7 1819 aa21.62■■□□□ 1.05
CLDN4-201ENST00000340958 CRKLP46109 303 aaKnown RBP21.61■■□□□ 1.05
CLDN4-201ENST00000340958 ITPK1Q13572 414 aa21.61■■□□□ 1.05
CLDN4-201ENST00000340958 ZNF827Q17R98 1081 aa21.61■■□□□ 1.05
CLDN4-201ENST00000340958 ANKRD45Q5TZF3 282 aa21.61■■□□□ 1.05
CLDN4-201ENST00000340958 STK32BQ9NY57 414 aa21.61■■□□□ 1.05
CLDN4-201ENST00000340958 IL6STP40189 918 aaPredicted RBP21.6■■□□□ 1.05
CLDN4-201ENST00000340958 ATP8B2P98198 1209 aa21.6■■□□□ 1.05
CLDN4-201ENST00000340958 GCKRQ14397 625 aa21.6■■□□□ 1.05
CLDN4-201ENST00000340958 SLC15A2Q16348 729 aa21.6■■□□□ 1.05
CLDN4-201ENST00000340958 CASZ1Q86V15 1759 aa21.59■■□□□ 1.05
CLDN4-201ENST00000340958 BCL11AQ9H165 835 aa21.59■■□□□ 1.05
CLDN4-201ENST00000340958 DCTPP1Q9H773 170 aa21.59■■□□□ 1.05
CLDN4-201ENST00000340958 TJP1Q07157 1748 aa21.58■■□□□ 1.05
CLDN4-201ENST00000340958 ZNF831Q5JPB2 1677 aa21.57■■□□□ 1.04
CLDN4-201ENST00000340958 C4BP0C0L5 1744 aa21.57■■□□□ 1.04
CLDN4-201ENST00000340958 QSER1Q2KHR3 1735 aa21.57■■□□□ 1.04
CLDN4-201ENST00000340958 NUCB1Q02818 461 aa21.57■■□□□ 1.04
CLDN4-201ENST00000340958 INTS5Q6P9B9 1019 aaKnown RBP21.57■■□□□ 1.04
CLDN4-201ENST00000340958 DZIP3Q86Y13 1208 aaKnown RBP21.57■■□□□ 1.04
CLDN4-201ENST00000340958 AKT1S1Q96B36 256 aa21.57■■□□□ 1.04
CLDN4-201ENST00000340958 CWC25Q9NXE8 425 aaPredicted RBP21.57■■□□□ 1.04
CLDN4-201ENST00000340958 MAP3K15Q6ZN16 1313 aa21.57■■□□□ 1.04
CLDN4-201ENST00000340958 ARFGEF2Q9Y6D5 1785 aa21.57■■□□□ 1.04
CLDN4-201ENST00000340958 A0A087WZG4 1122 aa21.57■■□□□ 1.04
CLDN4-201ENST00000340958 APBB1O00213 710 aa21.57■■□□□ 1.04
CLDN4-201ENST00000340958 CHD1LQ86WJ1 897 aa21.57■■□□□ 1.04
CLDN4-201ENST00000340958 PNMA6EA0A0J9YXQ4 647 aa21.56■■□□□ 1.04
CLDN4-201ENST00000340958 SRGAP3O43295 1099 aa21.56■■□□□ 1.04
CLDN4-201ENST00000340958 PPP1R42Q7Z4L9 355 aa21.56■■□□□ 1.04
CLDN4-201ENST00000340958 LNPKQ9C0E8 428 aa21.56■■□□□ 1.04
CLDN4-201ENST00000340958 PDGFDQ9GZP0 370 aaPredicted RBP21.56■■□□□ 1.04
CLDN4-201ENST00000340958 TBC1D2BQ9UPU7 963 aa21.56■■□□□ 1.04
CLDN4-201ENST00000340958 COL5A3P25940 1745 aaPredicted RBP21.55■■□□□ 1.04
CLDN4-201ENST00000340958 UTYO14607 1347 aa21.55■■□□□ 1.04
CLDN4-201ENST00000340958 TCIRG1Q13488 830 aa21.55■■□□□ 1.04
CLDN4-201ENST00000340958 HSP90AB3PQ58FF7 597 aa21.55■■□□□ 1.04
CLDN4-201ENST00000340958 UBE3BQ7Z3V4 1068 aa21.55■■□□□ 1.04
CLDN4-201ENST00000340958 CCDC191Q8NCU4 936 aa21.54■■□□□ 1.04
CLDN4-201ENST00000340958 LINC00116Q8NCU8 138 aa21.54■■□□□ 1.04
CLDN4-201ENST00000340958 SUCLG2Q96I99 432 aa21.54■■□□□ 1.04
CLDN4-201ENST00000340958 EIF5P55010 431 aaKnown RBP21.53■■□□□ 1.04
CLDN4-201ENST00000340958 JARID2Q92833 1246 aaPredicted RBP21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms