RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 PLEKHM2Q8IWE5 1019 aa16.61■□□□□ 0.25
HMGB1-202ENST00000339872 DNAJC10Q8IXB1 793 aa16.61■□□□□ 0.25
HMGB1-202ENST00000339872 MARCH10Q8NA82 808 aaPredicted RBP16.61■□□□□ 0.25
HMGB1-202ENST00000339872 HDAC5Q9UQL6 1122 aa16.61■□□□□ 0.25
HMGB1-202ENST00000339872 IBTKQ9P2D0 1353 aaPredicted RBP16.61■□□□□ 0.25
HMGB1-202ENST00000339872 FAM98CQ17RN3 349 aaKnown RBP16.61■□□□□ 0.25
HMGB1-202ENST00000339872 TEX13AQ9BXU3 409 aaPredicted RBP16.61■□□□□ 0.25
HMGB1-202ENST00000339872 UTYO14607 1347 aa16.6■□□□□ 0.25
HMGB1-202ENST00000339872 POLA2Q14181 598 aa16.6■□□□□ 0.25
HMGB1-202ENST00000339872 TTLL7Q6ZT98 887 aa16.6■□□□□ 0.25
HMGB1-202ENST00000339872 OTUD7AQ8TE49 926 aaPredicted RBP16.6■□□□□ 0.25
HMGB1-202ENST00000339872 LRRCC1Q9C099 1032 aa16.6■□□□□ 0.25
HMGB1-202ENST00000339872 GCKRQ14397 625 aa16.59■□□□□ 0.25
HMGB1-202ENST00000339872 FNBP4Q8N3X1 1017 aaPredicted RBP16.59■□□□□ 0.25
HMGB1-202ENST00000339872 ACSBG1Q96GR2 724 aa16.59■□□□□ 0.25
HMGB1-202ENST00000339872 TJP1Q07157 1748 aa16.59■□□□□ 0.25
HMGB1-202ENST00000339872 HSPA1LP34931 641 aa16.59■□□□□ 0.25
HMGB1-202ENST00000339872 SUCLG2Q96I99 432 aa16.58■□□□□ 0.25
HMGB1-202ENST00000339872 IPO9Q96P70 1041 aaKnown RBP16.58■□□□□ 0.25
HMGB1-202ENST00000339872 ATP5J2-PTCD1G3V325 749 aa16.58■□□□□ 0.24
HMGB1-202ENST00000339872 MSH5O43196 834 aa16.58■□□□□ 0.24
HMGB1-202ENST00000339872 STARD3NLO95772 234 aa16.58■□□□□ 0.24
HMGB1-202ENST00000339872 MTX1Q13505 466 aa16.58■□□□□ 0.24
HMGB1-202ENST00000339872 USP21Q9UK80 565 aa16.58■□□□□ 0.24
HMGB1-202ENST00000339872 ZNF330Q9Y3S2 320 aaPredicted RBP16.58■□□□□ 0.24
HMGB1-202ENST00000339872 SURF6O75683 361 aaKnown RBP16.57■□□□□ 0.24
HMGB1-202ENST00000339872 MEX3CQ5U5Q3 659 aaKnown RBP16.57■□□□□ 0.24
HMGB1-202ENST00000339872 SLC4A9Q96Q91 983 aa16.57■□□□□ 0.24
HMGB1-202ENST00000339872 ZBTB3Q9H5J0 574 aa16.57■□□□□ 0.24
HMGB1-202ENST00000339872 BICC1Q9H694 974 aaKnown RBP16.57■□□□□ 0.24
HMGB1-202ENST00000339872 UPF2Q9HAU5 1272 aaKnown RBP16.57■□□□□ 0.24
HMGB1-202ENST00000339872 GSPT1P15170 499 aaKnown RBP16.56■□□□□ 0.24
HMGB1-202ENST00000339872 MYT1Q01538 1121 aa16.56■□□□□ 0.24
HMGB1-202ENST00000339872 TTC22Q5TAA0 569 aa16.56■□□□□ 0.24
HMGB1-202ENST00000339872 KAZALD1Q96I82 304 aa16.56■□□□□ 0.24
HMGB1-202ENST00000339872 RAB11FIP3O75154 756 aa16.55■□□□□ 0.24
HMGB1-202ENST00000339872 UBE3BQ7Z3V4 1068 aa16.54■□□□□ 0.24
HMGB1-202ENST00000339872 CYP19A1P11511 503 aaPredicted RBP16.54■□□□□ 0.24
HMGB1-202ENST00000339872 JARID2Q92833 1246 aaPredicted RBP16.54■□□□□ 0.24
HMGB1-202ENST00000339872 A0A087WZG4 1122 aa16.53■□□□□ 0.24
HMGB1-202ENST00000339872 MFAP1P55081 439 aaKnown RBP16.53■□□□□ 0.24
HMGB1-202ENST00000339872 IL1RAPL2Q9NP60 686 aa16.53■□□□□ 0.24
HMGB1-202ENST00000339872 THSD7AQ9UPZ6 1657 aa16.53■□□□□ 0.24
HMGB1-202ENST00000339872 OS9Q13438 667 aaPredicted RBP16.53■□□□□ 0.24
HMGB1-202ENST00000339872 HSP90AB4PQ58FF6 505 aa16.53■□□□□ 0.24
HMGB1-202ENST00000339872 KIF6Q6ZMV9 814 aa16.53■□□□□ 0.24
HMGB1-202ENST00000339872 PDE1AP54750 535 aa16.52■□□□□ 0.24
HMGB1-202ENST00000339872 RHPN1Q8TCX5 695 aa16.52■□□□□ 0.24
HMGB1-202ENST00000339872 KIF1BPQ96EK5 621 aa16.52■□□□□ 0.24
HMGB1-202ENST00000339872 SALL3Q9BXA9 1300 aa16.52■□□□□ 0.24
HMGB1-202ENST00000339872 DDRGK1Q96HY6 314 aa16.52■□□□□ 0.23
HMGB1-202ENST00000339872 CWC25Q9NXE8 425 aaPredicted RBP16.52■□□□□ 0.23
HMGB1-202ENST00000339872 PA2G4Q9UQ80 394 aaKnown RBP16.52■□□□□ 0.23
HMGB1-202ENST00000339872 NOP58Q9Y2X3 529 aaKnown RBP16.52■□□□□ 0.23
HMGB1-202ENST00000339872 TUBGCP6Q96RT7 1819 aa16.51■□□□□ 0.23
HMGB1-202ENST00000339872 MX1P20591 662 aa16.51■□□□□ 0.23
HMGB1-202ENST00000339872 EPHA10Q5JZY3 1008 aa16.51■□□□□ 0.23
HMGB1-202ENST00000339872 ARXQ96QS3 562 aa16.51■□□□□ 0.23
HMGB1-202ENST00000339872 OSBPL3Q9H4L5 887 aa16.51■□□□□ 0.23
HMGB1-202ENST00000339872 ZBTB1Q9Y2K1 713 aa16.51■□□□□ 0.23
HMGB1-202ENST00000339872 KCNQ2O43526 872 aa16.51■□□□□ 0.23
HMGB1-202ENST00000339872 CDC45O75419 566 aa16.51■□□□□ 0.23
HMGB1-202ENST00000339872 TBC1D9Q6ZT07 1266 aa16.51■□□□□ 0.23
HMGB1-202ENST00000339872 AFF2P51816 1311 aa16.5■□□□□ 0.23
HMGB1-202ENST00000339872 TSHZ3Q63HK5 1081 aa16.5■□□□□ 0.23
HMGB1-202ENST00000339872 PALLDQ8WX93 1383 aa16.5■□□□□ 0.23
HMGB1-202ENST00000339872 CICQ96RK0 1608 aaPredicted RBP16.5■□□□□ 0.23
HMGB1-202ENST00000339872 COL15A1P39059 1388 aa16.5■□□□□ 0.23
HMGB1-202ENST00000339872 CASP7P55210 303 aa16.5■□□□□ 0.23
HMGB1-202ENST00000339872 CCDC191Q8NCU4 936 aa16.5■□□□□ 0.23
HMGB1-202ENST00000339872 TBC1D32Q96NH3 1257 aa16.5■□□□□ 0.23
HMGB1-202ENST00000339872 ATP6V1AP38606 617 aa16.49■□□□□ 0.23
HMGB1-202ENST00000339872 ANKRD36CQ5JPF3 1778 aa16.49■□□□□ 0.23
HMGB1-202ENST00000339872 MAP3K15Q6ZN16 1313 aa16.49■□□□□ 0.23
HMGB1-202ENST00000339872 LOC102724428A0A0B4J2F2 783 aa16.48■□□□□ 0.23
HMGB1-202ENST00000339872 SDSP20132 328 aa16.48■□□□□ 0.23
HMGB1-202ENST00000339872 SIK1P57059 783 aa16.48■□□□□ 0.23
HMGB1-202ENST00000339872 RTL5Q5HYW3 569 aaPredicted RBP16.48■□□□□ 0.23
HMGB1-202ENST00000339872 NUTM1Q86Y26 1132 aa16.48■□□□□ 0.23
HMGB1-202ENST00000339872 H7C1W4 665 aa16.48■□□□□ 0.23
HMGB1-202ENST00000339872 TCIRG1Q13488 830 aa16.48■□□□□ 0.23
HMGB1-202ENST00000339872 ERC1Q8IUD2 1116 aa16.47■□□□□ 0.23
HMGB1-202ENST00000339872 ISCA1Q9BUE6 129 aa16.47■□□□□ 0.23
HMGB1-202ENST00000339872 RABL6Q3YEC7 729 aaPredicted RBP16.47■□□□□ 0.23
HMGB1-202ENST00000339872 ERICH6Q7L0X2 663 aa16.47■□□□□ 0.23
HMGB1-202ENST00000339872 SMARCC1Q92922 1105 aaPredicted RBP16.47■□□□□ 0.23
HMGB1-202ENST00000339872 GJD4Q96KN9 370 aaPredicted RBP16.47■□□□□ 0.23
HMGB1-202ENST00000339872 C22orf23Q9BZE7 217 aa16.47■□□□□ 0.23
HMGB1-202ENST00000339872 SIL1Q9H173 461 aa16.47■□□□□ 0.23
HMGB1-202ENST00000339872 STAP2Q9UGK3 403 aa16.47■□□□□ 0.23
HMGB1-202ENST00000339872 RREB1Q92766 1687 aa16.47■□□□□ 0.23
HMGB1-202ENST00000339872 NUP98P52948 1817 aa16.47■□□□□ 0.23
HMGB1-202ENST00000339872 IL6STP40189 918 aaPredicted RBP16.46■□□□□ 0.23
HMGB1-202ENST00000339872 G3BP1Q13283 466 aaKnown RBP eCLIP16.46■□□□□ 0.23
HMGB1-202ENST00000339872 KLHDC4Q8TBB5 520 aa16.46■□□□□ 0.23
HMGB1-202ENST00000339872 COL5A3P25940 1745 aaPredicted RBP16.46■□□□□ 0.23
HMGB1-202ENST00000339872 ITPK1Q13572 414 aa16.46■□□□□ 0.23
HMGB1-202ENST00000339872 GIGYF2Q6Y7W6 1299 aaKnown RBP16.46■□□□□ 0.23
HMGB1-202ENST00000339872 CCDC87Q9NVE4 849 aa16.46■□□□□ 0.23
HMGB1-202ENST00000339872 NHSQ6T4R5 1651 aa16.46■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms