RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 PA2G4Q9UQ80 394 aaKnown RBP17.71■□□□□ 0.43
TPM3-206ENST00000330188 CSB-PGBD3P0DP91 1061 aa17.71■□□□□ 0.42
TPM3-206ENST00000330188 HSPA4P34932 840 aa17.71■□□□□ 0.42
TPM3-206ENST00000330188 MRE11P49959 708 aa17.71■□□□□ 0.42
TPM3-206ENST00000330188 CADPS2Q86UW7 1296 aa17.71■□□□□ 0.42
TPM3-206ENST00000330188 CLASRPQ8N2M8 674 aaKnown RBP17.71■□□□□ 0.42
TPM3-206ENST00000330188 ZDHHC9Q9Y397 364 aa17.71■□□□□ 0.42
TPM3-206ENST00000330188 GLRX3O76003 335 aaKnown RBP17.7■□□□□ 0.42
TPM3-206ENST00000330188 IGKV5-2P06315 115 aa17.7■□□□□ 0.42
TPM3-206ENST00000330188 CUL4AQ13619 759 aa17.7■□□□□ 0.42
TPM3-206ENST00000330188 CHRNA2Q15822 529 aa17.7■□□□□ 0.42
TPM3-206ENST00000330188 ERC1Q8IUD2 1116 aa17.7■□□□□ 0.42
TPM3-206ENST00000330188 RAD50Q92878 1312 aa17.7■□□□□ 0.42
TPM3-206ENST00000330188 PANK2Q9BZ23 570 aa17.69■□□□□ 0.42
TPM3-206ENST00000330188 SPATA31A3Q5VYP0 1347 aa17.69■□□□□ 0.42
TPM3-206ENST00000330188 MCTP1Q6DN14 999 aa17.69■□□□□ 0.42
TPM3-206ENST00000330188 RIC3Q7Z5B4 369 aa17.69■□□□□ 0.42
TPM3-206ENST00000330188 BICC1Q9H694 974 aaKnown RBP17.69■□□□□ 0.42
TPM3-206ENST00000330188 CYP27B1O15528 508 aa17.68■□□□□ 0.42
TPM3-206ENST00000330188 KLHL40Q2TBA0 621 aa17.68■□□□□ 0.42
TPM3-206ENST00000330188 LARP1Q6PKG0 1096 aaKnown RBP17.68■□□□□ 0.42
TPM3-206ENST00000330188 ZNF496Q96IT1 587 aaPredicted RBP17.68■□□□□ 0.42
TPM3-206ENST00000330188 GRPEL1Q9HAV7 217 aa17.68■□□□□ 0.42
TPM3-206ENST00000330188 XIRP1Q702N8 1843 aaKnown RBP17.68■□□□□ 0.42
TPM3-206ENST00000330188 MYL6BP14649 208 aa17.68■□□□□ 0.42
TPM3-206ENST00000330188 XAGE3Q8WTP9 111 aa17.68■□□□□ 0.42
TPM3-206ENST00000330188 DCAF5Q96JK2 942 aa17.68■□□□□ 0.42
TPM3-206ENST00000330188 LSG1Q9H089 658 aaKnown RBP17.68■□□□□ 0.42
TPM3-206ENST00000330188 CPDO75976 1380 aa17.68■□□□□ 0.42
TPM3-206ENST00000330188 UPF3BQ9BZI7 483 aaKnown RBP17.67■□□□□ 0.42
TPM3-206ENST00000330188 ECHDC1Q9NTX5 307 aa17.67■□□□□ 0.42
TPM3-206ENST00000330188 DDX49Q9Y6V7 483 aaKnown RBP17.67■□□□□ 0.42
TPM3-206ENST00000330188 PARP4Q9UKK3 1724 aaKnown RBP17.67■□□□□ 0.42
TPM3-206ENST00000330188 NEURL1BA8MQ27 555 aa17.66■□□□□ 0.42
TPM3-206ENST00000330188 LRP10Q7Z4F1 713 aa17.66■□□□□ 0.42
TPM3-206ENST00000330188 GAS2L3Q86XJ1 694 aa17.66■□□□□ 0.42
TPM3-206ENST00000330188 LMBRD1Q9NUN5 540 aa17.66■□□□□ 0.42
TPM3-206ENST00000330188 GLI3P10071 1580 aa17.66■□□□□ 0.42
TPM3-206ENST00000330188 SASH1O94885 1247 aa17.66■□□□□ 0.42
TPM3-206ENST00000330188 IFIT2P09913 472 aaKnown RBP17.66■□□□□ 0.42
TPM3-206ENST00000330188 COPS6Q7L5N1 327 aa17.66■□□□□ 0.42
TPM3-206ENST00000330188 INTS4Q96HW7 963 aaKnown RBP17.66■□□□□ 0.42
TPM3-206ENST00000330188 SNRPA1P09661 255 aaKnown RBP17.65■□□□□ 0.42
TPM3-206ENST00000330188 NEXNQ0ZGT2 675 aa17.65■□□□□ 0.42
TPM3-206ENST00000330188 CWC27Q6UX04 472 aaKnown RBP17.65■□□□□ 0.42
TPM3-206ENST00000330188 NOL8Q76FK4 1167 aaKnown RBP17.65■□□□□ 0.42
TPM3-206ENST00000330188 GPATCH3Q96I76 525 aa17.65■□□□□ 0.42
TPM3-206ENST00000330188 METTL22Q9BUU2 404 aaPredicted RBP17.65■□□□□ 0.42
TPM3-206ENST00000330188 USP16Q9Y5T5 823 aa17.65■□□□□ 0.42
TPM3-206ENST00000330188 LAMB4A4D0S4 1761 aa17.65■□□□□ 0.42
TPM3-206ENST00000330188 AFDNP55196 1824 aaKnown RBP17.65■□□□□ 0.42
TPM3-206ENST00000330188 GCKRQ14397 625 aa17.65■□□□□ 0.42
TPM3-206ENST00000330188 AACSQ86V21 672 aa17.65■□□□□ 0.42
TPM3-206ENST00000330188 TTC5Q8N0Z6 440 aa17.65■□□□□ 0.42
TPM3-206ENST00000330188 FAM43AQ8N2R8 423 aa17.65■□□□□ 0.42
TPM3-206ENST00000330188 SNX14Q9Y5W7 946 aa17.65■□□□□ 0.42
TPM3-206ENST00000330188 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.65■□□□□ 0.42
TPM3-206ENST00000330188 G3BP1Q13283 466 aaKnown RBP eCLIP17.64■□□□□ 0.411e-6■■■□□ 15.4
TPM3-206ENST00000330188 MYD88Q99836 296 aa17.64■□□□□ 0.41
TPM3-206ENST00000330188 ARFGEF2Q9Y6D5 1785 aa17.64■□□□□ 0.41
TPM3-206ENST00000330188 FMNL2Q96PY5 1086 aa17.63■□□□□ 0.41
TPM3-206ENST00000330188 DIAPH3Q9NSV4 1193 aa17.63■□□□□ 0.41
TPM3-206ENST00000330188 BRD1O95696 1058 aa17.62■□□□□ 0.41
TPM3-206ENST00000330188 KIAA1211Q6ZU35 1233 aa17.62■□□□□ 0.41
TPM3-206ENST00000330188 RASEFQ8IZ41 740 aa17.62■□□□□ 0.41
TPM3-206ENST00000330188 RUFY2Q8WXA3 655 aa17.62■□□□□ 0.41
TPM3-206ENST00000330188 EAF2Q96CJ1 260 aaPredicted RBP17.62■□□□□ 0.41
TPM3-206ENST00000330188 EPHA10Q5JZY3 1008 aa17.62■□□□□ 0.41
TPM3-206ENST00000330188 ANKRD13DQ6ZTN6 518 aa17.62■□□□□ 0.41
TPM3-206ENST00000330188 EVI5LQ96CN4 794 aa17.62■□□□□ 0.41
TPM3-206ENST00000330188 PIP4K2AP48426 406 aaPredicted RBP17.61■□□□□ 0.41
TPM3-206ENST00000330188 CABP4P57796 275 aa17.61■□□□□ 0.41
TPM3-206ENST00000330188 TTC14Q96N46 770 aa17.61■□□□□ 0.41
TPM3-206ENST00000330188 HSPA2P54652 639 aa17.6■□□□□ 0.41
TPM3-206ENST00000330188 BRINP3Q76B58 766 aa17.6■□□□□ 0.41
TPM3-206ENST00000330188 KLHDC4Q8TBB5 520 aa17.6■□□□□ 0.41
TPM3-206ENST00000330188 CHAMP1Q96JM3 812 aa17.6■□□□□ 0.41
TPM3-206ENST00000330188 CCDC8Q9H0W5 538 aaPredicted RBP17.6■□□□□ 0.41
TPM3-206ENST00000330188 SIL1Q9H173 461 aa17.6■□□□□ 0.41
TPM3-206ENST00000330188 PRPF40AO75400 957 aaKnown RBP17.59■□□□□ 0.41
TPM3-206ENST00000330188 PTH1RQ03431 593 aa17.59■□□□□ 0.41
TPM3-206ENST00000330188 TLR7Q9NYK1 1049 aaKnown RBP17.59■□□□□ 0.41
TPM3-206ENST00000330188 FOXD4L5Q5VV16 416 aaPredicted RBP17.59■□□□□ 0.41
TPM3-206ENST00000330188 FOXD4L4Q8WXT5 416 aaPredicted RBP17.59■□□□□ 0.41
TPM3-206ENST00000330188 COL15A1P39059 1388 aa17.58■□□□□ 0.4
TPM3-206ENST00000330188 UBR2Q8IWV8 1755 aa17.58■□□□□ 0.4
TPM3-206ENST00000330188 WDR17Q8IZU2 1322 aa17.57■□□□□ 0.4
TPM3-206ENST00000330188 CAVIN1Q6NZI2 390 aaKnown RBP17.57■□□□□ 0.4
TPM3-206ENST00000330188 GPT2Q8TD30 523 aa17.57■□□□□ 0.4
TPM3-206ENST00000330188 NCLP19338 710 aaKnown RBP17.57■□□□□ 0.4
TPM3-206ENST00000330188 RFX5P48382 616 aaPredicted RBP17.57■□□□□ 0.4
TPM3-206ENST00000330188 ZNF445P59923 1031 aa17.57■□□□□ 0.4
TPM3-206ENST00000330188 KCNB2Q92953 911 aa17.57■□□□□ 0.4
TPM3-206ENST00000330188 COPRSQ9NQ92 184 aa17.57■□□□□ 0.4
TPM3-206ENST00000330188 AK2P54819 239 aa17.56■□□□□ 0.4
TPM3-206ENST00000330188 JARID2Q92833 1246 aaPredicted RBP17.56■□□□□ 0.4
TPM3-206ENST00000330188 CCDC171Q6TFL3 1326 aa17.56■□□□□ 0.4
TPM3-206ENST00000330188 HIP1O00291 1037 aa17.56■□□□□ 0.4
TPM3-206ENST00000330188 RABL6Q3YEC7 729 aaPredicted RBP17.56■□□□□ 0.4
TPM3-206ENST00000330188 RUFY3Q7L099 469 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 270.3 ms