RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 ZNF287Q9HBT7 754 aa11.1□□□□□ -0.63
PTPRE-202ENST00000306042 FOXD4L5Q5VV16 416 aaPredicted RBP11.09□□□□□ -0.63
PTPRE-202ENST00000306042 FOXD4L4Q8WXT5 416 aaPredicted RBP11.09□□□□□ -0.63
PTPRE-202ENST00000306042 CTNNA3Q9UI47 895 aa11.09□□□□□ -0.63
PTPRE-202ENST00000306042 KRT24Q2M2I5 525 aa11.09□□□□□ -0.63
PTPRE-202ENST00000306042 RBM17Q96I25 401 aaKnown RBP11.09□□□□□ -0.63
PTPRE-202ENST00000306042 ZNF496Q96IT1 587 aaPredicted RBP11.09□□□□□ -0.63
PTPRE-202ENST00000306042 ATP6V1DQ9Y5K8 247 aa11.09□□□□□ -0.63
PTPRE-202ENST00000306042 RTL1A6NKG5 1358 aa11.09□□□□□ -0.63
PTPRE-202ENST00000306042 BOLA2Q9H3K6 86 aa11.09□□□□□ -0.63
PTPRE-202ENST00000306042 HDAC9Q9UKV0 1011 aa11.09□□□□□ -0.63
PTPRE-202ENST00000306042 SPATA31A6Q5VVP1 1343 aa11.09□□□□□ -0.63
PTPRE-202ENST00000306042 SPHKAPQ2M3C7 1700 aa11.09□□□□□ -0.63
PTPRE-202ENST00000306042 NRDCO43847 1150 aa11.09□□□□□ -0.63
PTPRE-202ENST00000306042 SPTY2D1Q68D10 685 aaPredicted RBP11.09□□□□□ -0.63
PTPRE-202ENST00000306042 EYA3Q99504 573 aa11.09□□□□□ -0.63
PTPRE-202ENST00000306042 H0YIN7 160 aa11.08□□□□□ -0.64
PTPRE-202ENST00000306042 BRMS1Q9HCU9 246 aa11.08□□□□□ -0.64
PTPRE-202ENST00000306042 KIDINS220Q9ULH0 1771 aa11.08□□□□□ -0.64
PTPRE-202ENST00000306042 ARHGAP45Q92619 1136 aa11.08□□□□□ -0.64
PTPRE-202ENST00000306042 TRIM44Q96DX7 344 aaPredicted RBP11.08□□□□□ -0.64
PTPRE-202ENST00000306042 MPHOSPH10O00566 681 aaKnown RBP11.08□□□□□ -0.64
PTPRE-202ENST00000306042 CROCC2H7BZ55 1655 aa11.08□□□□□ -0.64
PTPRE-202ENST00000306042 SH3TC1Q8TE82 1336 aa11.08□□□□□ -0.64
PTPRE-202ENST00000306042 TNS3Q68CZ2 1445 aa11.08□□□□□ -0.64
PTPRE-202ENST00000306042 HOXB7P09629 217 aa11.08□□□□□ -0.64
PTPRE-202ENST00000306042 LOC102724428A0A0B4J2F2 783 aa11.07□□□□□ -0.64
PTPRE-202ENST00000306042 MX1P20591 662 aa11.07□□□□□ -0.64
PTPRE-202ENST00000306042 SIK1P57059 783 aa11.07□□□□□ -0.64
PTPRE-202ENST00000306042 MSL1Q68DK7 614 aa11.07□□□□□ -0.64
PTPRE-202ENST00000306042 PLBD2Q8NHP8 589 aa11.07□□□□□ -0.64
PTPRE-202ENST00000306042 AATKQ6ZMQ8 1374 aa11.07□□□□□ -0.64
PTPRE-202ENST00000306042 FBXO41Q8TF61 875 aa11.07□□□□□ -0.64
PTPRE-202ENST00000306042 SETD1BQ9UPS6 1966 aaKnown RBP11.07□□□□□ -0.64
PTPRE-202ENST00000306042 ZMYM4Q5VZL5 1548 aa11.07□□□□□ -0.64
PTPRE-202ENST00000306042 ZNF804AQ7Z570 1209 aa11.07□□□□□ -0.64
PTPRE-202ENST00000306042 UBAC1Q9BSL1 405 aa11.07□□□□□ -0.64
PTPRE-202ENST00000306042 CEP170BQ9Y4F5 1589 aaPredicted RBP11.07□□□□□ -0.64
PTPRE-202ENST00000306042 BAG3O95817 575 aa11.06□□□□□ -0.64
PTPRE-202ENST00000306042 CWF19L2Q2TBE0 894 aaKnown RBP11.06□□□□□ -0.64
PTPRE-202ENST00000306042 CWC27Q6UX04 472 aaKnown RBP11.06□□□□□ -0.64
PTPRE-202ENST00000306042 TSPYL6Q8N831 410 aa11.06□□□□□ -0.64
PTPRE-202ENST00000306042 PTMSP20962 102 aa11.06□□□□□ -0.64
PTPRE-202ENST00000306042 GPR162Q16538 588 aa11.06□□□□□ -0.64
PTPRE-202ENST00000306042 SYAP1Q96A49 352 aaPredicted RBP11.06□□□□□ -0.64
PTPRE-202ENST00000306042 MKNK2Q9HBH9 465 aa11.06□□□□□ -0.64
PTPRE-202ENST00000306042 SMC3Q9UQE7 1217 aa11.06□□□□□ -0.64
PTPRE-202ENST00000306042 UQCRFS1P1P0C7P4 283 aa11.06□□□□□ -0.64
PTPRE-202ENST00000306042 ATP2B3Q16720 1220 aa11.06□□□□□ -0.64
PTPRE-202ENST00000306042 C1orf167Q5SNV9 1468 aa11.06□□□□□ -0.64
PTPRE-202ENST00000306042 TTF1Q15361 905 aaPredicted RBP11.06□□□□□ -0.64
PTPRE-202ENST00000306042 GJD4Q96KN9 370 aaPredicted RBP11.06□□□□□ -0.64
PTPRE-202ENST00000306042 SMARCA5O60264 1052 aaPredicted RBP11.05□□□□□ -0.64
PTPRE-202ENST00000306042 FAM89AQ96GI7 184 aa11.05□□□□□ -0.64
PTPRE-202ENST00000306042 ANKRD2Q9GZV1 360 aa11.05□□□□□ -0.64
PTPRE-202ENST00000306042 PHAXQ9H814 394 aaKnown RBP11.05□□□□□ -0.64
PTPRE-202ENST00000306042 MINDY4BA8MYZ0 360 aa11.05□□□□□ -0.64
PTPRE-202ENST00000306042 VAMP4O75379 141 aa11.05□□□□□ -0.64
PTPRE-202ENST00000306042 LMOD1P29536 600 aaPredicted RBP11.05□□□□□ -0.64
PTPRE-202ENST00000306042 C22orf23Q9BZE7 217 aa11.05□□□□□ -0.64
PTPRE-202ENST00000306042 PPRC1Q5VV67 1664 aaKnown RBP11.05□□□□□ -0.64
PTPRE-202ENST00000306042 MRPL50Q8N5N7 158 aaKnown RBP11.05□□□□□ -0.64
PTPRE-202ENST00000306042 SNRKQ9NRH2 765 aa11.05□□□□□ -0.64
PTPRE-202ENST00000306042 KIF24Q5T7B8 1368 aa11.05□□□□□ -0.64
PTPRE-202ENST00000306042 CCDC69A6NI79 296 aa11.05□□□□□ -0.64
PTPRE-202ENST00000306042 NLGN1Q8N2Q7 840 aa11.05□□□□□ -0.64
PTPRE-202ENST00000306042 NAPBQ9H115 298 aa11.05□□□□□ -0.64
PTPRE-202ENST00000306042 IL15P40933 162 aaPredicted RBP11.04□□□□□ -0.64
PTPRE-202ENST00000306042 FOSBP53539 338 aa11.04□□□□□ -0.64
PTPRE-202ENST00000306042 ZGPATQ8N5A5 531 aaKnown RBP11.04□□□□□ -0.64
PTPRE-202ENST00000306042 RIMBP2O15034 1052 aa11.04□□□□□ -0.64
PTPRE-202ENST00000306042 IMMTQ16891 758 aaKnown RBP11.04□□□□□ -0.64
PTPRE-202ENST00000306042 MEIS3Q99687 375 aa11.04□□□□□ -0.64
PTPRE-202ENST00000306042 VPS37CA5D8V6 355 aaPredicted RBP11.04□□□□□ -0.64
PTPRE-202ENST00000306042 F8W031 263 aaPredicted RBP11.04□□□□□ -0.64
PTPRE-202ENST00000306042 CHL1O00533 1208 aa11.04□□□□□ -0.64
PTPRE-202ENST00000306042 KDM4AO75164 1064 aa11.04□□□□□ -0.64
PTPRE-202ENST00000306042 HCLS1P14317 486 aaPredicted RBP11.04□□□□□ -0.64
PTPRE-202ENST00000306042 GSTO1P78417 241 aa11.04□□□□□ -0.64
PTPRE-202ENST00000306042 FOXD4L6Q3SYB3 417 aaPredicted RBP11.04□□□□□ -0.64
PTPRE-202ENST00000306042 FOXD4L3Q6VB84 417 aaPredicted RBP11.04□□□□□ -0.64
PTPRE-202ENST00000306042 KRI1Q8N9T8 703 aaKnown RBP11.04□□□□□ -0.64
PTPRE-202ENST00000306042 IQSEC3Q9UPP2 1182 aaPredicted RBP11.04□□□□□ -0.64
PTPRE-202ENST00000306042 CDC42BPGQ6DT37 1551 aa11.04□□□□□ -0.64
PTPRE-202ENST00000306042 NUP133Q8WUM0 1156 aa11.04□□□□□ -0.64
PTPRE-202ENST00000306042 CCDC191Q8NCU4 936 aa11.03□□□□□ -0.64
PTPRE-202ENST00000306042 ASAP1Q9ULH1 1129 aa11.03□□□□□ -0.64
PTPRE-202ENST00000306042 PTCH1Q13635 1447 aa11.03□□□□□ -0.64
PTPRE-202ENST00000306042 ZC3H13Q5T200 1668 aaKnown RBP11.03□□□□□ -0.64
PTPRE-202ENST00000306042 RBM19Q9Y4C8 960 aaKnown RBP11.03□□□□□ -0.64
PTPRE-202ENST00000306042 MADDQ8WXG6 1647 aa11.03□□□□□ -0.64
PTPRE-202ENST00000306042 E9PCH4 1651 aa11.03□□□□□ -0.64
PTPRE-202ENST00000306042 NF2P35240 595 aa11.03□□□□□ -0.64
PTPRE-202ENST00000306042 ECHDC1Q9NTX5 307 aa11.03□□□□□ -0.64
PTPRE-202ENST00000306042 HLA-DOAP06340 250 aa11.03□□□□□ -0.64
PTPRE-202ENST00000306042 IL17REQ8NFR9 667 aa11.03□□□□□ -0.64
PTPRE-202ENST00000306042 METTL22Q9BUU2 404 aaPredicted RBP11.03□□□□□ -0.64
PTPRE-202ENST00000306042 IGSF1Q8N6C5 1336 aa11.02□□□□□ -0.64
PTPRE-202ENST00000306042 GOLIM4O00461 696 aa11.02□□□□□ -0.64
PTPRE-202ENST00000306042 EIF4A1P60842 406 aaKnown RBP11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms