RNA–Protein interactions for RNA: ENST00000295911.6

CLRN1-201, Transcript of clarin 1, humanhuman

TSL 1 (best) BASIC

Gene CLRN1, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1-201ENST00000295911 NLRP2Q9NX02 1062 aa11.45□□□□□ -0.58
CLRN1-201ENST00000295911 HDAC5Q9UQL6 1122 aa11.45□□□□□ -0.58
CLRN1-201ENST00000295911 HEG1Q9ULI3 1381 aa11.45□□□□□ -0.58
CLRN1-201ENST00000295911 PARP4Q9UKK3 1724 aaKnown RBP11.45□□□□□ -0.58
CLRN1-201ENST00000295911 UBTFL1P0CB47 393 aaPredicted RBP11.44□□□□□ -0.58
CLRN1-201ENST00000295911 FBXO22Q8NEZ5 403 aa11.44□□□□□ -0.58
CLRN1-201ENST00000295911 SRCIN1Q9C0H9 1055 aa11.44□□□□□ -0.58
CLRN1-201ENST00000295911 GIGYF1O75420 1035 aaPredicted RBP11.43□□□□□ -0.58
CLRN1-201ENST00000295911 HSP90AB1P08238 724 aaKnown RBP11.43□□□□□ -0.58
CLRN1-201ENST00000295911 CSB-PGBD3P0DP91 1061 aa11.43□□□□□ -0.58
CLRN1-201ENST00000295911 CASC1Q6TDU7 716 aa11.43□□□□□ -0.58
CLRN1-201ENST00000295911 TMEM92Q6UXU6 159 aa11.43□□□□□ -0.58
CLRN1-201ENST00000295911 TBC1D9Q6ZT07 1266 aa11.43□□□□□ -0.58
CLRN1-201ENST00000295911 PAXIP1Q6ZW49 1069 aaPredicted RBP11.43□□□□□ -0.58
CLRN1-201ENST00000295911 USP44Q9H0E7 712 aa11.43□□□□□ -0.58
CLRN1-201ENST00000295911 OSBPL3Q9H4L5 887 aa11.43□□□□□ -0.58
CLRN1-201ENST00000295911 HYPKQ9NX55 129 aa11.43□□□□□ -0.58
CLRN1-201ENST00000295911 CHPF2Q9P2E5 772 aa11.43□□□□□ -0.58
CLRN1-201ENST00000295911 TUBGCP6Q96RT7 1819 aa11.43□□□□□ -0.58
CLRN1-201ENST00000295911 KCNQ3O43525 872 aa11.43□□□□□ -0.58
CLRN1-201ENST00000295911 IFNL2Q8IZJ0 200 aa11.43□□□□□ -0.58
CLRN1-201ENST00000295911 DNAAF4Q8WXU2 420 aa11.43□□□□□ -0.58
CLRN1-201ENST00000295911 DDX17Q92841 729 aaKnown RBP11.43□□□□□ -0.58
CLRN1-201ENST00000295911 MFRPQ9BY79 579 aa11.43□□□□□ -0.58
CLRN1-201ENST00000295911 PHAXQ9H814 394 aaKnown RBP11.43□□□□□ -0.58
CLRN1-201ENST00000295911 AK9Q5TCS8 1911 aa11.43□□□□□ -0.58
CLRN1-201ENST00000295911 RAB11FIP3O75154 756 aa11.42□□□□□ -0.58
CLRN1-201ENST00000295911 ALDH1L1O75891 902 aa11.42□□□□□ -0.58
CLRN1-201ENST00000295911 HOXB3P14651 431 aaPredicted RBP11.42□□□□□ -0.58
CLRN1-201ENST00000295911 PHKG2P15735 406 aa11.42□□□□□ -0.58
CLRN1-201ENST00000295911 BRINP3Q76B58 766 aa11.42□□□□□ -0.58
CLRN1-201ENST00000295911 TBC1D2Q9BYX2 928 aa11.42□□□□□ -0.58
CLRN1-201ENST00000295911 LRRCC1Q9C099 1032 aa11.42□□□□□ -0.58
CLRN1-201ENST00000295911 SLC52A2Q9HAB3 445 aa11.42□□□□□ -0.58
CLRN1-201ENST00000295911 DDX58O95786 925 aaKnown RBP11.41□□□□□ -0.58
CLRN1-201ENST00000295911 GSPT1P15170 499 aaKnown RBP11.41□□□□□ -0.58
CLRN1-201ENST00000295911 MRC1P22897 1456 aa11.41□□□□□ -0.58
CLRN1-201ENST00000295911 BEND3Q5T5X7 828 aa11.41□□□□□ -0.58
CLRN1-201ENST00000295911 C16orf71Q8IYS4 520 aaPredicted RBP11.41□□□□□ -0.58
CLRN1-201ENST00000295911 SNX21Q969T3 373 aa11.41□□□□□ -0.58
CLRN1-201ENST00000295911 DCAF5Q96JK2 942 aa11.41□□□□□ -0.58
CLRN1-201ENST00000295911 ABCA3Q99758 1704 aa11.41□□□□□ -0.58
CLRN1-201ENST00000295911 SLAIN2Q9P270 581 aa11.41□□□□□ -0.58
CLRN1-201ENST00000295911 LRRFIP2Q9Y608 721 aaKnown RBP11.41□□□□□ -0.58
CLRN1-201ENST00000295911 C5P01031 1676 aa11.4□□□□□ -0.58
CLRN1-201ENST00000295911 MEGF6O75095 1541 aa11.4□□□□□ -0.58
CLRN1-201ENST00000295911 IBTKQ9P2D0 1353 aaPredicted RBP11.4□□□□□ -0.58
CLRN1-201ENST00000295911 SOS2Q07890 1332 aaPredicted RBP11.4□□□□□ -0.58
CLRN1-201ENST00000295911 PI4KAP2A4QPH2 592 aa11.4□□□□□ -0.58
CLRN1-201ENST00000295911 SMARCA5O60264 1052 aaPredicted RBP11.4□□□□□ -0.58
CLRN1-201ENST00000295911 NFKBIBQ15653 356 aa11.4□□□□□ -0.58
CLRN1-201ENST00000295911 HSP90AB4PQ58FF6 505 aa11.4□□□□□ -0.58
CLRN1-201ENST00000295911 ZNF790Q6PG37 636 aa11.4□□□□□ -0.58
CLRN1-201ENST00000295911 KSR2Q6VAB6 950 aa11.4□□□□□ -0.58
CLRN1-201ENST00000295911 HSCBQ8IWL3 235 aa11.4□□□□□ -0.58
CLRN1-201ENST00000295911 PI4KAP1Q8N8J0 262 aa11.4□□□□□ -0.58
CLRN1-201ENST00000295911 CABLES1Q8TDN4 633 aa11.4□□□□□ -0.58
CLRN1-201ENST00000295911 SSH3Q8TE77 659 aa11.4□□□□□ -0.58
CLRN1-201ENST00000295911 DDX21Q9NR30 783 aaKnown RBP eCLIP11.4□□□□□ -0.58
CLRN1-201ENST00000295911 NHSL1Q5SYE7 1610 aa11.39□□□□□ -0.59
CLRN1-201ENST00000295911 KDM6AO15550 1401 aaPredicted RBP11.39□□□□□ -0.59
CLRN1-201ENST00000295911 AOX1Q06278 1338 aa11.39□□□□□ -0.59
CLRN1-201ENST00000295911 KDM4FA0A1W2PPD8 638 aa11.39□□□□□ -0.59
CLRN1-201ENST00000295911 APBB1O00213 710 aa11.39□□□□□ -0.59
CLRN1-201ENST00000295911 PDE1AP54750 535 aa11.39□□□□□ -0.59
CLRN1-201ENST00000295911 LAMB4A4D0S4 1761 aa11.39□□□□□ -0.59
CLRN1-201ENST00000295911 ADCY9O60503 1353 aa11.38□□□□□ -0.59
CLRN1-201ENST00000295911 PNMA6EA0A0J9YXQ4 647 aa11.38□□□□□ -0.59
CLRN1-201ENST00000295911 SDSP20132 328 aa11.38□□□□□ -0.59
CLRN1-201ENST00000295911 CHRNA2Q15822 529 aa11.38□□□□□ -0.59
CLRN1-201ENST00000295911 STAP2Q9UGK3 403 aa11.38□□□□□ -0.59
CLRN1-201ENST00000295911 EXOC6BQ9Y2D4 811 aa11.38□□□□□ -0.59
CLRN1-201ENST00000295911 WDR17Q8IZU2 1322 aa11.37□□□□□ -0.59
CLRN1-201ENST00000295911 REC8O95072 547 aa11.37□□□□□ -0.59
CLRN1-201ENST00000295911 NFATC2IPQ8NCF5 419 aa11.37□□□□□ -0.59
CLRN1-201ENST00000295911 ANTXR1Q9H6X2 564 aa11.37□□□□□ -0.59
CLRN1-201ENST00000295911 PRDM11Q9NQV5 511 aa11.37□□□□□ -0.59
CLRN1-201ENST00000295911 MAP3K2Q9Y2U5 619 aa11.37□□□□□ -0.59
CLRN1-201ENST00000295911 SALL3Q9BXA9 1300 aa11.36□□□□□ -0.59
CLRN1-201ENST00000295911 AFDNP55196 1824 aaKnown RBP11.36□□□□□ -0.59
CLRN1-201ENST00000295911 SNRPA1P09661 255 aaKnown RBP11.36□□□□□ -0.59
CLRN1-201ENST00000295911 MX1P20591 662 aa11.36□□□□□ -0.59
CLRN1-201ENST00000295911 MTX1Q13505 466 aa11.36□□□□□ -0.59
CLRN1-201ENST00000295911 PPP1R42Q7Z4L9 355 aa11.36□□□□□ -0.59
CLRN1-201ENST00000295911 TTC5Q8N0Z6 440 aa11.36□□□□□ -0.59
CLRN1-201ENST00000295911 SPRYD3Q8NCJ5 442 aa11.36□□□□□ -0.59
CLRN1-201ENST00000295911 LINS1Q8NG48 757 aa11.36□□□□□ -0.59
CLRN1-201ENST00000295911 OTUD7AQ8TE49 926 aaPredicted RBP11.36□□□□□ -0.59
CLRN1-201ENST00000295911 C9orf78Q9NZ63 289 aaPredicted RBP11.36□□□□□ -0.59
CLRN1-201ENST00000295911 ZNF335Q9H4Z2 1342 aaPredicted RBP11.36□□□□□ -0.59
CLRN1-201ENST00000295911 LARP1Q6PKG0 1096 aaKnown RBP11.35□□□□□ -0.59
CLRN1-201ENST00000295911 KIF1BPQ96EK5 621 aa11.35□□□□□ -0.59
CLRN1-201ENST00000295911 FMNL2Q96PY5 1086 aa11.35□□□□□ -0.59
CLRN1-201ENST00000295911 UTYO14607 1347 aa11.35□□□□□ -0.59
CLRN1-201ENST00000295911 PCDH11XQ9BZA7 1347 aa11.35□□□□□ -0.59
CLRN1-201ENST00000295911 PCDH11YQ9BZA8 1340 aa11.35□□□□□ -0.59
CLRN1-201ENST00000295911 COL5A2P05997 1499 aaPredicted RBP11.35□□□□□ -0.59
CLRN1-201ENST00000295911 ERC2O15083 957 aa11.35□□□□□ -0.59
CLRN1-201ENST00000295911 CYP27B1O15528 508 aa11.35□□□□□ -0.59
CLRN1-201ENST00000295911 SRGAP3O43295 1099 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms