RNA–Protein interactions for RNA: ENST00000267996.11

TPM1-201, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,670 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-201ENST00000267996 ACSBG1Q96GR2 724 aa20.4■□□□□ 0.86
TPM1-201ENST00000267996 TJP1Q07157 1748 aa20.4■□□□□ 0.86
TPM1-201ENST00000267996 NUP188Q5SRE5 1749 aa20.4■□□□□ 0.86
TPM1-201ENST00000267996 ONECUT3O60422 494 aaPredicted RBP20.39■□□□□ 0.86
TPM1-201ENST00000267996 CYP19A1P11511 503 aaPredicted RBP20.39■□□□□ 0.86
TPM1-201ENST00000267996 MTX1Q13505 466 aa20.39■□□□□ 0.86
TPM1-201ENST00000267996 POLA2Q14181 598 aa20.39■□□□□ 0.86
TPM1-201ENST00000267996 TTLL7Q6ZT98 887 aa20.39■□□□□ 0.86
TPM1-201ENST00000267996 MYD88Q99836 296 aa20.39■□□□□ 0.86
TPM1-201ENST00000267996 C9orf78Q9NZ63 289 aaPredicted RBP20.39■□□□□ 0.86
TPM1-201ENST00000267996 GCKRQ14397 625 aa20.38■□□□□ 0.85
TPM1-201ENST00000267996 CICQ96RK0 1608 aaPredicted RBP20.38■□□□□ 0.85
TPM1-201ENST00000267996 PPP1R42Q7Z4L9 355 aa20.37■□□□□ 0.85
TPM1-201ENST00000267996 TRPC5Q9UL62 973 aaPredicted RBP20.37■□□□□ 0.85
TPM1-201ENST00000267996 SMARCC1Q92922 1105 aaPredicted RBP20.35■□□□□ 0.85
TPM1-201ENST00000267996 KAZALD1Q96I82 304 aa20.35■□□□□ 0.85
TPM1-201ENST00000267996 COL15A1P39059 1388 aa20.35■□□□□ 0.85
TPM1-201ENST00000267996 KCNQ2O43526 872 aa20.35■□□□□ 0.85
TPM1-201ENST00000267996 SUCLG2Q96I99 432 aa20.34■□□□□ 0.85
TPM1-201ENST00000267996 AFDNP55196 1824 aaKnown RBP20.34■□□□□ 0.85
TPM1-201ENST00000267996 ZNF831Q5JPB2 1677 aa20.33■□□□□ 0.85
TPM1-201ENST00000267996 LOC102724428A0A0B4J2F2 783 aa20.33■□□□□ 0.85
TPM1-201ENST00000267996 SIK1P57059 783 aa20.33■□□□□ 0.85
TPM1-201ENST00000267996 PALLDQ8WX93 1383 aa20.33■□□□□ 0.84
TPM1-201ENST00000267996 SRGAP3O43295 1099 aa20.32■□□□□ 0.84
TPM1-201ENST00000267996 EXOC6BQ9Y2D4 811 aa20.32■□□□□ 0.84
TPM1-201ENST00000267996 RREB1Q92766 1687 aa20.32■□□□□ 0.84
TPM1-201ENST00000267996 A0A0G2JS52 829 aa20.32■□□□□ 0.84
TPM1-201ENST00000267996 ATP5J2-PTCD1G3V325 749 aa20.32■□□□□ 0.84
TPM1-201ENST00000267996 CASP7P55210 303 aa20.32■□□□□ 0.84
TPM1-201ENST00000267996 MYT1Q01538 1121 aa20.32■□□□□ 0.84
TPM1-201ENST00000267996 PLEKHM2Q8IWE5 1019 aa20.32■□□□□ 0.84
TPM1-201ENST00000267996 ZBTB47Q9UFB7 747 aaPredicted RBP20.32■□□□□ 0.84
TPM1-201ENST00000267996 ZBTB1Q9Y2K1 713 aa20.32■□□□□ 0.84
TPM1-201ENST00000267996 IL6STP40189 918 aaPredicted RBP20.31■□□□□ 0.84
TPM1-201ENST00000267996 ZBTB3Q9H5J0 574 aa20.31■□□□□ 0.84
TPM1-201ENST00000267996 NOP58Q9Y2X3 529 aaKnown RBP20.31■□□□□ 0.84
TPM1-201ENST00000267996 SMARCA5O60264 1052 aaPredicted RBP20.3■□□□□ 0.84
TPM1-201ENST00000267996 RAB11FIP3O75154 756 aa20.3■□□□□ 0.84
TPM1-201ENST00000267996 TRIM28Q13263 835 aaKnown RBP20.3■□□□□ 0.84
TPM1-201ENST00000267996 BMP2KLQ5H9B9 411 aa20.3■□□□□ 0.84
TPM1-201ENST00000267996 CCDC191Q8NCU4 936 aa20.3■□□□□ 0.84
TPM1-201ENST00000267996 ISCA1Q9BUE6 129 aa20.3■□□□□ 0.84
TPM1-201ENST00000267996 NHSQ6T4R5 1651 aa20.3■□□□□ 0.84
TPM1-201ENST00000267996 MAP3K15Q6ZN16 1313 aa20.3■□□□□ 0.84
TPM1-201ENST00000267996 H7C1W4 665 aa20.29■□□□□ 0.84
TPM1-201ENST00000267996 ATP6V1AP38606 617 aa20.29■□□□□ 0.84
TPM1-201ENST00000267996 TCIRG1Q13488 830 aa20.29■□□□□ 0.84
TPM1-201ENST00000267996 INTS5Q6P9B9 1019 aaKnown RBP20.29■□□□□ 0.84
TPM1-201ENST00000267996 KIF6Q6ZMV9 814 aa20.29■□□□□ 0.84
TPM1-201ENST00000267996 C16orf71Q8IYS4 520 aaPredicted RBP20.29■□□□□ 0.84
TPM1-201ENST00000267996 LRRCC1Q9C099 1032 aa20.29■□□□□ 0.84
TPM1-201ENST00000267996 BICC1Q9H694 974 aaKnown RBP20.29■□□□□ 0.84
TPM1-201ENST00000267996 QTRT2Q9H974 415 aaKnown RBP20.29■□□□□ 0.84
TPM1-201ENST00000267996 CWC25Q9NXE8 425 aaPredicted RBP20.29■□□□□ 0.84
TPM1-201ENST00000267996 ITPK1Q13572 414 aa20.29■□□□□ 0.84
TPM1-201ENST00000267996 A0A087WZG4 1122 aa20.28■□□□□ 0.84
TPM1-201ENST00000267996 SEPT12Q8IYM1 358 aa20.28■□□□□ 0.84
TPM1-201ENST00000267996 APBB1O00213 710 aa20.27■□□□□ 0.84
TPM1-201ENST00000267996 SURF6O75683 361 aaKnown RBP20.27■□□□□ 0.84
TPM1-201ENST00000267996 EIF5P55010 431 aaKnown RBP20.27■□□□□ 0.84
TPM1-201ENST00000267996 RABL6Q3YEC7 729 aaPredicted RBP20.27■□□□□ 0.84
TPM1-201ENST00000267996 CCDC87Q9NVE4 849 aa20.27■□□□□ 0.84
TPM1-201ENST00000267996 SALL3Q9BXA9 1300 aa20.27■□□□□ 0.84
TPM1-201ENST00000267996 HSP90AB4PQ58FF6 505 aa20.26■□□□□ 0.83
TPM1-201ENST00000267996 EPHA10Q5JZY3 1008 aa20.26■□□□□ 0.83
TPM1-201ENST00000267996 GIGYF2Q6Y7W6 1299 aaKnown RBP20.26■□□□□ 0.83
TPM1-201ENST00000267996 UBE3BQ7Z3V4 1068 aa20.26■□□□□ 0.83
TPM1-201ENST00000267996 OTUD7AQ8TE49 926 aaPredicted RBP20.26■□□□□ 0.83
TPM1-201ENST00000267996 COL5A3P25940 1745 aaPredicted RBP20.26■□□□□ 0.83
TPM1-201ENST00000267996 ERVV-1B6SEH8 477 aa20.26■□□□□ 0.83
TPM1-201ENST00000267996 CRKLP46109 303 aaKnown RBP20.26■□□□□ 0.83
TPM1-201ENST00000267996 OSBPL3Q9H4L5 887 aa20.26■□□□□ 0.83
TPM1-201ENST00000267996 ZNF330Q9Y3S2 320 aaPredicted RBP20.26■□□□□ 0.83
TPM1-201ENST00000267996 MYH14Q7Z406 1995 aaKnown RBP20.25■□□□□ 0.83
TPM1-201ENST00000267996 BTAF1O14981 1849 aa20.25■□□□□ 0.83
TPM1-201ENST00000267996 PTF1AQ7RTS3 328 aa20.25■□□□□ 0.83
TPM1-201ENST00000267996 HSP90AB3PQ58FF7 597 aa20.24■□□□□ 0.83
TPM1-201ENST00000267996 KIF1BPQ96EK5 621 aa20.24■□□□□ 0.83
TPM1-201ENST00000267996 SBF2Q86WG5 1849 aa20.24■□□□□ 0.83
TPM1-201ENST00000267996 RHPN1Q8TCX5 695 aa20.23■□□□□ 0.83
TPM1-201ENST00000267996 JARID2Q92833 1246 aaPredicted RBP20.23■□□□□ 0.83
TPM1-201ENST00000267996 HLFQ16534 295 aa20.22■□□□□ 0.83
TPM1-201ENST00000267996 TTC22Q5TAA0 569 aa20.22■□□□□ 0.83
TPM1-201ENST00000267996 SEC24BO95487 1268 aa20.22■□□□□ 0.83
TPM1-201ENST00000267996 GSPT1P15170 499 aaKnown RBP20.22■□□□□ 0.83
TPM1-201ENST00000267996 FOXO4P98177 505 aa20.22■□□□□ 0.83
TPM1-201ENST00000267996 DZIP3Q86Y13 1208 aaKnown RBP20.22■□□□□ 0.83
TPM1-201ENST00000267996 STAP2Q9UGK3 403 aa20.22■□□□□ 0.83
TPM1-201ENST00000267996 ANKRD36CQ5JPF3 1778 aa20.21■□□□□ 0.83
TPM1-201ENST00000267996 RFX5P48382 616 aaPredicted RBP20.21■□□□□ 0.83
TPM1-201ENST00000267996 PDE1AP54750 535 aa20.21■□□□□ 0.83
TPM1-201ENST00000267996 FAM182BQ5T319 152 aa20.21■□□□□ 0.83
TPM1-201ENST00000267996 NUP98P52948 1817 aa20.2■□□□□ 0.82
TPM1-201ENST00000267996 ERC1Q8IUD2 1116 aa20.2■□□□□ 0.82
TPM1-201ENST00000267996 LINC00116Q8NCU8 138 aa20.2■□□□□ 0.82
TPM1-201ENST00000267996 COPRSQ9NQ92 184 aa20.2■□□□□ 0.82
TPM1-201ENST00000267996 PA2G4Q9UQ80 394 aaKnown RBP20.2■□□□□ 0.82
TPM1-201ENST00000267996 PCCAP05165 728 aaPredicted RBP20.19■□□□□ 0.82
TPM1-201ENST00000267996 NPM2Q86SE8 214 aaKnown RBP20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms