RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ECHDC1Q9NTX5 307 aa14.01□□□□□ -0.17
VPS4A-201ENST00000254950 IQSEC2Q5JU85 1478 aa14.01□□□□□ -0.17
VPS4A-201ENST00000254950 MAP2P11137 1827 aaKnown RBP14.01□□□□□ -0.17
VPS4A-201ENST00000254950 KDM2BQ8NHM5 1336 aa14.01□□□□□ -0.17
VPS4A-201ENST00000254950 GBP4Q96PP9 640 aa14.01□□□□□ -0.17
VPS4A-201ENST00000254950 LDHAL6AQ6ZMR3 332 aa14□□□□□ -0.17
VPS4A-201ENST00000254950 CPDO75976 1380 aa14□□□□□ -0.17
VPS4A-201ENST00000254950 ASAP1Q9ULH1 1129 aa14□□□□□ -0.17
VPS4A-201ENST00000254950 JCADQ9P266 1359 aa14□□□□□ -0.17
VPS4A-201ENST00000254950 CRB1P82279 1406 aa14□□□□□ -0.17
VPS4A-201ENST00000254950 CCDC191Q8NCU4 936 aa14□□□□□ -0.17
VPS4A-201ENST00000254950 CCDC87Q9NVE4 849 aa14□□□□□ -0.17
VPS4A-201ENST00000254950 NIP7Q9Y221 180 aaKnown RBP eCLIP14□□□□□ -0.17
VPS4A-201ENST00000254950 RTCBQ9Y3I0 505 aaKnown RBP14□□□□□ -0.17
VPS4A-201ENST00000254950 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.99□□□□□ -0.174e-6■■□□□ 12.7
VPS4A-201ENST00000254950 PHF14O94880 888 aa13.99□□□□□ -0.17
VPS4A-201ENST00000254950 FKBP4Q02790 459 aaKnown RBP eCLIP13.99□□□□□ -0.17
VPS4A-201ENST00000254950 BOLA2Q9H3K6 86 aa13.99□□□□□ -0.17
VPS4A-201ENST00000254950 CCNL1Q9UK58 526 aaPredicted RBP13.99□□□□□ -0.17
VPS4A-201ENST00000254950 TTC22Q5TAA0 569 aa13.99□□□□□ -0.17
VPS4A-201ENST00000254950 IFIT1P09914 478 aaKnown RBP13.98□□□□□ -0.17
VPS4A-201ENST00000254950 NBPF7P0C2Y1 421 aaPredicted RBP13.98□□□□□ -0.17
VPS4A-201ENST00000254950 GCKRQ14397 625 aa13.98□□□□□ -0.17
VPS4A-201ENST00000254950 RABEP1Q15276 862 aa13.98□□□□□ -0.17
VPS4A-201ENST00000254950 PROSER3Q2NL68 480 aa13.98□□□□□ -0.17
VPS4A-201ENST00000254950 CDC5LQ99459 802 aaKnown RBP13.98□□□□□ -0.17
VPS4A-201ENST00000254950 USP44Q9H0E7 712 aa13.98□□□□□ -0.17
VPS4A-201ENST00000254950 BICC1Q9H694 974 aaKnown RBP13.98□□□□□ -0.17
VPS4A-201ENST00000254950 TRDNQ13061 729 aa13.98□□□□□ -0.17
VPS4A-201ENST00000254950 CHMP4CQ96CF2 233 aa13.98□□□□□ -0.17
VPS4A-201ENST00000254950 PA2G4Q9UQ80 394 aaKnown RBP13.98□□□□□ -0.17
VPS4A-201ENST00000254950 PDE1AP54750 535 aa13.97□□□□□ -0.17
VPS4A-201ENST00000254950 NBPF5PQ86XG9 351 aaPredicted RBP13.97□□□□□ -0.17
VPS4A-201ENST00000254950 SETDB2Q96T68 719 aa13.97□□□□□ -0.17
VPS4A-201ENST00000254950 UTP14AQ9BVJ6 771 aaKnown RBP13.97□□□□□ -0.17
VPS4A-201ENST00000254950 HEG1Q9ULI3 1381 aa13.97□□□□□ -0.17
VPS4A-201ENST00000254950 PRAMEF22A3QJZ6 481 aa13.97□□□□□ -0.17
VPS4A-201ENST00000254950 CCDC152Q4G0S7 254 aa13.97□□□□□ -0.17
VPS4A-201ENST00000254950 BEND3Q5T5X7 828 aa13.97□□□□□ -0.17
VPS4A-201ENST00000254950 KIF3AQ9Y496 699 aa13.97□□□□□ -0.17
VPS4A-201ENST00000254950 IL15P40933 162 aaPredicted RBP13.96□□□□□ -0.17
VPS4A-201ENST00000254950 CWC27Q6UX04 472 aaKnown RBP13.96□□□□□ -0.17
VPS4A-201ENST00000254950 BCL11BQ9C0K0 894 aaPredicted RBP13.96□□□□□ -0.17
VPS4A-201ENST00000254950 QTRT2Q9H974 415 aaKnown RBP13.96□□□□□ -0.17
VPS4A-201ENST00000254950 GNPATO15228 680 aa13.96□□□□□ -0.17
VPS4A-201ENST00000254950 ZSCAN25Q6NSZ9 544 aa13.96□□□□□ -0.17
VPS4A-201ENST00000254950 PIGBQ92521 554 aa13.96□□□□□ -0.17
VPS4A-201ENST00000254950 NEURL1BA8MQ27 555 aa13.96□□□□□ -0.17
VPS4A-201ENST00000254950 TPRNQ4KMQ1 711 aa13.96□□□□□ -0.17
VPS4A-201ENST00000254950 IRS4O14654 1257 aaPredicted RBP13.96□□□□□ -0.18
VPS4A-201ENST00000254950 PSMA5P28066 241 aa13.96□□□□□ -0.18
VPS4A-201ENST00000254950 LOC102724428A0A0B4J2F2 783 aa13.95□□□□□ -0.18
VPS4A-201ENST00000254950 SIK1P57059 783 aa13.95□□□□□ -0.18
VPS4A-201ENST00000254950 TTLL7Q6ZT98 887 aa13.95□□□□□ -0.18
VPS4A-201ENST00000254950 AMOTL1Q8IY63 956 aa13.95□□□□□ -0.18
VPS4A-201ENST00000254950 C16orf71Q8IYS4 520 aaPredicted RBP13.95□□□□□ -0.18
VPS4A-201ENST00000254950 FBXW7Q969H0 707 aa13.95□□□□□ -0.18
VPS4A-201ENST00000254950 GOLGA6L4A6NEF3 574 aa13.95□□□□□ -0.18
VPS4A-201ENST00000254950 NEK4P51957 841 aa13.95□□□□□ -0.18
VPS4A-201ENST00000254950 PARP10Q53GL7 1025 aa13.95□□□□□ -0.18
VPS4A-201ENST00000254950 TSHZ3Q63HK5 1081 aa13.95□□□□□ -0.18
VPS4A-201ENST00000254950 XRN1Q8IZH2 1706 aaKnown RBP13.95□□□□□ -0.18
VPS4A-201ENST00000254950 TCIRG1Q13488 830 aa13.95□□□□□ -0.18
VPS4A-201ENST00000254950 SUCLG2Q96I99 432 aa13.95□□□□□ -0.18
VPS4A-201ENST00000254950 NRKQ7Z2Y5 1582 aa13.94□□□□□ -0.18
VPS4A-201ENST00000254950 SLC5A1P13866 664 aa13.94□□□□□ -0.18
VPS4A-201ENST00000254950 TBC1D9Q6ZT07 1266 aa13.94□□□□□ -0.18
VPS4A-201ENST00000254950 RALYLQ86SE5 291 aaKnown RBP13.94□□□□□ -0.18
VPS4A-201ENST00000254950 FAM89AQ96GI7 184 aa13.94□□□□□ -0.18
VPS4A-201ENST00000254950 KIF1AQ12756 1690 aa13.94□□□□□ -0.18
VPS4A-201ENST00000254950 PNMA6EA0A0J9YXQ4 647 aa13.94□□□□□ -0.18
VPS4A-201ENST00000254950 EVI5LQ96CN4 794 aa13.94□□□□□ -0.18
VPS4A-201ENST00000254950 ISY1Q9ULR0 285 aaKnown RBP13.94□□□□□ -0.18
VPS4A-201ENST00000254950 SH3TC1Q8TE82 1336 aa13.93□□□□□ -0.18
VPS4A-201ENST00000254950 VSIG10Q8N0Z9 540 aa13.93□□□□□ -0.18
VPS4A-201ENST00000254950 NLRP3Q96P20 1036 aa13.93□□□□□ -0.18
VPS4A-201ENST00000254950 NYXQ9GZU5 481 aa13.93□□□□□ -0.18
VPS4A-201ENST00000254950 FMN2Q9NZ56 1722 aa13.93□□□□□ -0.18
VPS4A-201ENST00000254950 SDSP20132 328 aa13.93□□□□□ -0.18
VPS4A-201ENST00000254950 PTMSP20962 102 aa13.93□□□□□ -0.18
VPS4A-201ENST00000254950 MCM2P49736 904 aa13.93□□□□□ -0.18
VPS4A-201ENST00000254950 SPATA31A6Q5VVP1 1343 aa13.93□□□□□ -0.18
VPS4A-201ENST00000254950 GNL2Q13823 731 aaKnown RBP13.93□□□□□ -0.18
VPS4A-201ENST00000254950 TPTE2Q6XPS3 522 aa13.93□□□□□ -0.18
VPS4A-201ENST00000254950 DDX46Q7L014 1031 aaKnown RBP13.93□□□□□ -0.18
VPS4A-201ENST00000254950 PLEKHM2Q8IWE5 1019 aa13.93□□□□□ -0.18
VPS4A-201ENST00000254950 KLHL34Q8N239 644 aa13.92□□□□□ -0.18
VPS4A-201ENST00000254950 RPGRQ92834 1020 aaKnown RBP13.92□□□□□ -0.18
VPS4A-201ENST00000254950 TRAPPC3LQ5T215 181 aa13.92□□□□□ -0.18
VPS4A-201ENST00000254950 CHMP5Q9NZZ3 219 aa13.92□□□□□ -0.18
VPS4A-201ENST00000254950 IDH1O75874 414 aaKnown RBP13.92□□□□□ -0.18
VPS4A-201ENST00000254950 CAVIN4Q5BKX8 364 aa13.92□□□□□ -0.18
VPS4A-201ENST00000254950 CPLX2Q6PUV4 134 aaKnown RBP13.92□□□□□ -0.18
VPS4A-201ENST00000254950 SYNE3Q6ZMZ3 975 aa13.92□□□□□ -0.18
VPS4A-201ENST00000254950 ZNF142P52746 1687 aaPredicted RBP13.91□□□□□ -0.18
VPS4A-201ENST00000254950 AFF2P51816 1311 aa13.91□□□□□ -0.18
VPS4A-201ENST00000254950 SSH3Q8TE77 659 aa13.91□□□□□ -0.18
VPS4A-201ENST00000254950 CEMIPQ8WUJ3 1361 aa13.91□□□□□ -0.18
VPS4A-201ENST00000254950 ATP2B3Q16720 1220 aa13.91□□□□□ -0.18
VPS4A-201ENST00000254950 RTN4Q9NQC3 1192 aaKnown RBP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms