RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 TTC21AQ8NDW8 1320 aa10.13□□□□□ -0.79
PTCD3-201ENST00000254630 C6orf229H3BNL8 230 aa10.13□□□□□ -0.79
PTCD3-201ENST00000254630 GUCY1B3Q02153 619 aa10.13□□□□□ -0.79
PTCD3-201ENST00000254630 CCDC183Q5T5S1 534 aa10.12□□□□□ -0.79
PTCD3-201ENST00000254630 GOLIM4O00461 696 aa10.12□□□□□ -0.79
PTCD3-201ENST00000254630 PAXIP1Q6ZW49 1069 aaPredicted RBP10.12□□□□□ -0.79
PTCD3-201ENST00000254630 ZNF622Q969S3 477 aaKnown RBP eCLIP10.12□□□□□ -0.792e-8■■□□□ 12.2
PTCD3-201ENST00000254630 RAB34Q9BZG1 259 aa10.12□□□□□ -0.79
PTCD3-201ENST00000254630 PLCH2O75038 1416 aa10.12□□□□□ -0.79
PTCD3-201ENST00000254630 FGFR1OPO95684 399 aaKnown RBP10.12□□□□□ -0.79
PTCD3-201ENST00000254630 CCDC152Q4G0S7 254 aa10.12□□□□□ -0.79
PTCD3-201ENST00000254630 KAT14Q9H8E8 782 aa10.12□□□□□ -0.79
PTCD3-201ENST00000254630 EIF3JO75822 258 aaKnown RBP10.12□□□□□ -0.79
PTCD3-201ENST00000254630 SNRPA1P09661 255 aaKnown RBP10.12□□□□□ -0.79
PTCD3-201ENST00000254630 CASQ1P31415 396 aa10.12□□□□□ -0.79
PTCD3-201ENST00000254630 CFAP100Q494V2 611 aa10.12□□□□□ -0.79
PTCD3-201ENST00000254630 UHRF1BP1LA0JNW5 1464 aa10.11□□□□□ -0.79
PTCD3-201ENST00000254630 SYCE3A1L190 88 aa10.11□□□□□ -0.79
PTCD3-201ENST00000254630 SPA17Q15506 151 aa10.11□□□□□ -0.79
PTCD3-201ENST00000254630 SLC4A8Q2Y0W8 1093 aa10.11□□□□□ -0.79
PTCD3-201ENST00000254630 EIF4G3O43432 1585 aaKnown RBP10.11□□□□□ -0.79
PTCD3-201ENST00000254630 ATP5J2-PTCD1G3V325 749 aa10.11□□□□□ -0.79
PTCD3-201ENST00000254630 C20orf194Q5TEA3 1177 aa10.11□□□□□ -0.79
PTCD3-201ENST00000254630 MPNDQ8N594 471 aa10.11□□□□□ -0.79
PTCD3-201ENST00000254630 CENPHQ9H3R5 247 aa10.11□□□□□ -0.79
PTCD3-201ENST00000254630 CCDC12Q8WUD4 166 aaPredicted RBP10.11□□□□□ -0.79
PTCD3-201ENST00000254630 TSPYL1Q9H0U9 437 aa10.11□□□□□ -0.79
PTCD3-201ENST00000254630 ANO10Q9NW15 660 aa10.11□□□□□ -0.79
PTCD3-201ENST00000254630 HLA-DOAP06340 250 aa10.11□□□□□ -0.79
PTCD3-201ENST00000254630 TMEM67Q5HYA8 995 aa10.11□□□□□ -0.79
PTCD3-201ENST00000254630 CCDC144CPQ8IYA2 1237 aa10.11□□□□□ -0.79
PTCD3-201ENST00000254630 CCDC194A0A1B0GVG4 234 aa10.11□□□□□ -0.79
PTCD3-201ENST00000254630 BAG3O95817 575 aa10.11□□□□□ -0.79
PTCD3-201ENST00000254630 PDE4BQ07343 736 aa10.11□□□□□ -0.79
PTCD3-201ENST00000254630 CCT2P78371 535 aaKnown RBP10.11□□□□□ -0.79
PTCD3-201ENST00000254630 IL16Q14005 1332 aa10.11□□□□□ -0.79
PTCD3-201ENST00000254630 CHRNA2Q15822 529 aa10.1□□□□□ -0.79
PTCD3-201ENST00000254630 FAM83GA6ND36 823 aa10.1□□□□□ -0.79
PTCD3-201ENST00000254630 TRIM27P14373 513 aa10.1□□□□□ -0.79
PTCD3-201ENST00000254630 KIF5BP33176 963 aa10.1□□□□□ -0.79
PTCD3-201ENST00000254630 MCM4P33991 863 aa10.1□□□□□ -0.79
PTCD3-201ENST00000254630 C11orf95C9JLR9 678 aaPredicted RBP10.1□□□□□ -0.79
PTCD3-201ENST00000254630 GJB2P29033 226 aa10.1□□□□□ -0.79
PTCD3-201ENST00000254630 ATP6V1AP38606 617 aa10.1□□□□□ -0.79
PTCD3-201ENST00000254630 FERMT3Q86UX7 667 aa10.1□□□□□ -0.79
PTCD3-201ENST00000254630 MAST1Q9Y2H9 1570 aa10.1□□□□□ -0.79
PTCD3-201ENST00000254630 UQCRHLA0A096LP55 91 aa10.1□□□□□ -0.79
PTCD3-201ENST00000254630 LDHCP07864 332 aa10.1□□□□□ -0.79
PTCD3-201ENST00000254630 UQCRHP07919 91 aa10.1□□□□□ -0.79
PTCD3-201ENST00000254630 WDR78Q5VTH9 848 aa10.1□□□□□ -0.79
PTCD3-201ENST00000254630 ZCRB1Q8TBF4 217 aaKnown RBP10.1□□□□□ -0.79
PTCD3-201ENST00000254630 LIMCH1Q9UPQ0 1083 aa10.1□□□□□ -0.79
PTCD3-201ENST00000254630 MYO1BO43795 1136 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 UQCRFS1P1P0C7P4 283 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 NBPF6Q5VWK0 638 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 KLHL10Q6JEL2 608 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 MFSD6Q6ZSS7 791 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 CACNA2D4Q7Z3S7 1137 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 TAX1BP1Q86VP1 789 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 NBPF5PQ86XG9 351 aaPredicted RBP10.09□□□□□ -0.79
PTCD3-201ENST00000254630 CALML4Q96GE6 196 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 ACSBG1Q96GR2 724 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 NBPF4Q96M43 638 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 CRNKL1Q9BZJ0 848 aaKnown RBP10.09□□□□□ -0.79
PTCD3-201ENST00000254630 CABP5Q9NP86 173 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 BRPF3Q9ULD4 1205 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 LIG1P18858 919 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 RBM10P98175 930 aaKnown RBP10.09□□□□□ -0.79
PTCD3-201ENST00000254630 CADPS2Q86UW7 1296 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 NUP160Q12769 1436 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 WDR62O43379 1518 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 CCDC82Q8N4S0 544 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 FEZ1Q99689 392 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 ARHGAP29Q52LW3 1261 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 LDHAL6AQ6ZMR3 332 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 CHPF2Q9P2E5 772 aa10.09□□□□□ -0.79
PTCD3-201ENST00000254630 KIAA0754O94854 1291 aa10.08□□□□□ -0.8
PTCD3-201ENST00000254630 CNNM3Q8NE01 707 aa10.08□□□□□ -0.8
PTCD3-201ENST00000254630 MPHOSPH6Q99547 160 aaKnown RBP10.08□□□□□ -0.8
PTCD3-201ENST00000254630 SCAND2PQ9GZW5 306 aaPredicted RBP10.08□□□□□ -0.8
PTCD3-201ENST00000254630 ECHDC1Q9NTX5 307 aa10.08□□□□□ -0.8
PTCD3-201ENST00000254630 ATP10BO94823 1461 aa10.08□□□□□ -0.8
PTCD3-201ENST00000254630 TSPY2A6NKD2 308 aa10.08□□□□□ -0.8
PTCD3-201ENST00000254630 CETN2P41208 172 aa10.08□□□□□ -0.8
PTCD3-201ENST00000254630 METAP2P50579 478 aaKnown RBP eCLIP10.08□□□□□ -0.8
PTCD3-201ENST00000254630 TTC22Q5TAA0 569 aa10.08□□□□□ -0.8
PTCD3-201ENST00000254630 CTAGE5O15320 804 aa10.08□□□□□ -0.8
PTCD3-201ENST00000254630 MYCNP04198 464 aaPredicted RBP10.08□□□□□ -0.8
PTCD3-201ENST00000254630 NCOA7Q8NI08 942 aa10.08□□□□□ -0.8
PTCD3-201ENST00000254630 JARID2Q92833 1246 aaPredicted RBP10.08□□□□□ -0.8
PTCD3-201ENST00000254630 FERMT2Q96AC1 680 aa10.08□□□□□ -0.8
PTCD3-201ENST00000254630 CCDC66A2RUB6 948 aa10.08□□□□□ -0.8
PTCD3-201ENST00000254630 CCDC178Q5BJE1 867 aa10.08□□□□□ -0.8
PTCD3-201ENST00000254630 FILIP1Q7Z7B0 1213 aa10.08□□□□□ -0.8
PTCD3-201ENST00000254630 KIF20AO95235 890 aa10.08□□□□□ -0.8
PTCD3-201ENST00000254630 ADGBQ8N7X0 1667 aa10.08□□□□□ -0.8
PTCD3-201ENST00000254630 VAT1LQ9HCJ6 419 aa10.07□□□□□ -0.8
PTCD3-201ENST00000254630 AMPD3Q01432 767 aa10.07□□□□□ -0.8
PTCD3-201ENST00000254630 UBE3BQ7Z3V4 1068 aa10.07□□□□□ -0.8
PTCD3-201ENST00000254630 HMG20BQ9P0W2 317 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms