RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 SPATA19Q7Z5L4 167 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 OR4N4Q8N0Y3 316 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 CHDHQ8NE62 594 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 PROKR1Q8TCW9 393 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 TANKQ92844 425 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 NPY6RQ99463 290 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 KAT8Q9H7Z6 458 aaKnown RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ENAMQ9NRM1 1142 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 IKZF3Q9UKT9 509 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 CSNK1G3Q9Y6M4 447 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 DOCK2Q92608 1830 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ZGRF1Q86YA3 2104 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ENO4A6NNW6 628 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 HSBP1L1C9JCN9 74 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 SSNA1O43805 119 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 DHFRP00374 187 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 AK1P00568 194 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF806P0C7X5 589 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 TNFRSF8P28908 595 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 SPIBQ01892 262 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 SIX1Q15475 284 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 CDKL4Q5MAI5 379 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 NKAIN2Q5VXU1 208 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 LIPMQ5VYY2 423 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 FCRL6Q6DN72 434 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 Q6ZS52 159 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 FRMD7Q6ZUT3 714 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 LARP4Q71RC2 724 aaKnown RBP eCLIP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 DPPA4Q7L190 304 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 KMT5CQ86Y97 462 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF610Q8N9Z0 462 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 FAM47BQ8NA70 645 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 GLIS3Q8NEA6 775 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 OR51D1Q8NGF3 324 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 OR52E4Q8NGH9 312 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 OR5B2Q96R09 309 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ORAI3Q9BRQ5 295 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 COPS4Q9BT78 406 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 LUZP4Q9P127 313 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 PRELID1Q9Y255 219 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 GPC6Q9Y625 555 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 CHD3Q12873 2000 aaKnown RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 BORCS7-ASMTA0A0B4J1R7 106 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 A0A1B0GX78 115 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 H0Y8X5 98 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 SULT2B1O00204 365 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 RLN2P04090 185 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 JUNP05412 331 aaKnown RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 CSN2P05814 226 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 UROSP10746 265 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 CD44P16070 742 aaKnown RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 GSTT1P30711 240 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ADH7P40394 386 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 USP46P62068 366 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 SHC2P98077 582 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 DOC2AQ14183 400 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 GXYLT1Q4G148 440 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 OGFOD2Q6N063 350 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 LIPIQ6XZB0 460 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 DNAJC5GQ8N7S2 189 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 OR14A16Q8NHC5 309 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 BORCS7Q96B45 105 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 GPRC5BQ9NZH0 403 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 LRFN1Q9P244 771 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 FBXO9Q9UK97 447 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 SNED1Q8TER0 1413 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 A0A1W2PP18 115 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 MAGEA13PA6NCF6 341 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 PRSS44E7EML9 344 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 CCL21O00585 134 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 FKBP6O75344 327 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 PRLP01236 227 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 EIF4EP06730 217 aaKnown RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 MDH1P40925 334 aaKnown RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 IFI35P80217 286 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 IHHQ14623 411 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 TMEM44Q2T9K0 475 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 PLK5Q496M5 336 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ERMP1Q7Z2K6 904 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 WFDC8Q8IUA0 241 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 LRRC25Q8N386 305 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 KBTBD8Q8NFY9 601 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 TP53INP1Q96A56 240 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 DUSP9Q99956 384 aaKnown RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 WDR12Q9GZL7 423 aaKnown RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ACTR6Q9GZN1 396 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 CWH43Q9H720 699 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 TMEM138Q9NPI0 162 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 EIF2B3Q9NR50 452 aaKnown RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 CHRAC1Q9NRG0 131 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF175Q9Y473 711 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 A0A1W2PPL8 197 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 GPR171O14626 319 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 PDCD5O14737 125 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 PPP1R37O75864 691 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 TSPAN19P0C672 248 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 HLA-FP30511 346 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 OR1D4P47884 311 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms