RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 GMNNO75496 209 aa17.31■□□□□ 0.36
CLN3-254ENST00000637050 BMP2P12643 396 aa17.31■□□□□ 0.36
CLN3-254ENST00000637050 ETFAP13804 333 aa17.31■□□□□ 0.36
CLN3-254ENST00000637050 PPP2R1BP30154 601 aa17.31■□□□□ 0.36
CLN3-254ENST00000637050 CRATP43155 626 aa17.31■□□□□ 0.36
CLN3-254ENST00000637050 POLE2P56282 527 aa17.31■□□□□ 0.36
CLN3-254ENST00000637050 C6orf120Q7Z4R8 191 aa17.31■□□□□ 0.36
CLN3-254ENST00000637050 ZNF595Q8IYB9 648 aa17.31■□□□□ 0.36
CLN3-254ENST00000637050 OR52E4Q8NGH9 312 aa17.31■□□□□ 0.36
CLN3-254ENST00000637050 OR51Q1Q8NH59 317 aa17.31■□□□□ 0.36
CLN3-254ENST00000637050 MOAP1Q96BY2 351 aa17.31■□□□□ 0.36
CLN3-254ENST00000637050 NSMCE2Q96MF7 247 aa17.31■□□□□ 0.36
CLN3-254ENST00000637050 OR6C1Q96RD1 312 aa17.31■□□□□ 0.36
CLN3-254ENST00000637050 SRPK3Q9UPE1 567 aa17.31■□□□□ 0.36
CLN3-254ENST00000637050 MRPS33Q9Y291 106 aaKnown RBP17.31■□□□□ 0.36
CLN3-254ENST00000637050 MAP4K5Q9Y4K4 846 aa17.31■□□□□ 0.36
CLN3-254ENST00000637050 A0A1B0GX78 115 aa17.3■□□□□ 0.36
CLN3-254ENST00000637050 ATP1B1P05026 303 aa17.3■□□□□ 0.36
CLN3-254ENST00000637050 NUDT7P0C024 238 aa17.3■□□□□ 0.36
CLN3-254ENST00000637050 ALAS2P22557 587 aa17.3■□□□□ 0.36
CLN3-254ENST00000637050 PTGER1P34995 402 aa17.3■□□□□ 0.36
CLN3-254ENST00000637050 MTX3Q5HYI7 312 aa17.3■□□□□ 0.36
CLN3-254ENST00000637050 MED25Q71SY5 747 aa17.3■□□□□ 0.36
CLN3-254ENST00000637050 B3GNT8Q7Z7M8 397 aa17.3■□□□□ 0.36
CLN3-254ENST00000637050 FIG4Q92562 907 aa17.3■□□□□ 0.36
CLN3-254ENST00000637050 TBC1D20Q96BZ9 403 aa17.3■□□□□ 0.36
CLN3-254ENST00000637050 ELP4Q96EB1 424 aa17.3■□□□□ 0.36
CLN3-254ENST00000637050 PARD6AQ9NPB6 346 aa17.3■□□□□ 0.36
CLN3-254ENST00000637050 NDOR1Q9UHB4 597 aa17.3■□□□□ 0.36
CLN3-254ENST00000637050 RAPGEFL1Q9UHV5 662 aa17.3■□□□□ 0.36
CLN3-254ENST00000637050 MAU2Q9Y6X3 613 aa17.3■□□□□ 0.36
CLN3-254ENST00000637050 SPTBP11277 2137 aa17.3■□□□□ 0.36
CLN3-254ENST00000637050 DMDP11532 3685 aa17.3■□□□□ 0.36
CLN3-254ENST00000637050 CTNSO60931 367 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 ANPEPP15144 967 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 OR1D4P47884 311 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 PDX1P52945 283 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 CASP9P55211 416 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 ID2Q02363 134 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 VEZF1Q14119 521 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 DSG2Q14126 1118 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 MAP7Q14244 749 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 C16orf72Q14CZ0 275 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 LTB4RQ15722 352 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 TMEM107Q6UX40 140 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 RBCK1Q9BYM8 510 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 TMEM38AQ9H6F2 299 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 ZCCHC3Q9NUD5 404 aaKnown RBP17.29■□□□□ 0.36
CLN3-254ENST00000637050 NTMQ9P121 344 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 NCDNQ9UBB6 729 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 RARRES3Q9UL19 164 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 PLOD2O00469 737 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 CLDN4O14493 209 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 EMC8O43402 210 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 HYAL3O43820 417 aaPredicted RBP17.29■□□□□ 0.36
CLN3-254ENST00000637050 CREG1O75629 220 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 FHP07954 510 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 SLC7A1P30825 629 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 MC3RP41968 323 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 MAGEA8P43361 318 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 XCR1P46094 333 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 IGLV3-21P80748 117 aaPredicted RBP17.29■□□□□ 0.36
CLN3-254ENST00000637050 RBBP4Q09028 425 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 TP53BP2Q13625 1128 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 GCNT6Q5T4J0 391 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 RHBDD2Q6NTF9 364 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 BHLHB9Q6PI77 547 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 RNF111Q6ZNA4 994 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 BPHLQ86WA6 291 aaPredicted RBP17.29■□□□□ 0.36
CLN3-254ENST00000637050 C11orf65Q8NCR3 313 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 OR56A1Q8NGH5 318 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 CANT1Q8WVQ1 401 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.29■□□□□ 0.36
CLN3-254ENST00000637050 COL26A1Q96A83 441 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 SLCO4A1Q96BD0 722 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 C3orf14Q9HBI5 128 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 ZNF304Q9HCX3 659 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 OCIAD1Q9NX40 245 aa17.29■□□□□ 0.36
CLN3-254ENST00000637050 FAF1Q9UNN5 650 aaPredicted RBP17.29■□□□□ 0.36
CLN3-254ENST00000637050 MYO15AQ9UKN7 3530 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 DHRS12A0PJE2 317 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 C4orf47A7E2U8 309 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 SLITRK5O94991 958 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 GPIP06744 558 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 SLC35E2P0CK97 266 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 UMPSP11172 480 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 TGM1P22735 817 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 CSTF2P33240 577 aaKnown RBP eCLIP17.28■□□□□ 0.36
CLN3-254ENST00000637050 PCGF2P35227 344 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 SOX18P35713 384 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 NBL1P41271 181 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 HSD17B7P56937 341 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 PRR5P85299 388 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 SLC34A1Q06495 639 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 ERV3-1Q14264 604 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 ZNF628Q5EBL2 1059 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 IRAK1BP1Q5VVH5 260 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 ADGRG5Q8IZF4 528 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 HORMAD2Q8N7B1 307 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 AGBL5Q8NDL9 886 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms