RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SAXO2Q658L1 398 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 TNFAIP8L2Q6P589 184 aaPredicted RBP18.89■□□□□ 0.61
CLN3-250ENST00000636839 DGAT2L6Q6ZPD8 337 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 ENDOVQ8N8Q3 282 aaKnown RBP18.89■□□□□ 0.61
CLN3-250ENST00000636839 OR52N2Q8NGI0 321 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 OR10Q1Q8NGQ4 319 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 CANT1Q8WVQ1 401 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 RSRC1Q96IZ7 334 aaKnown RBP18.89■□□□□ 0.61
CLN3-250ENST00000636839 CTRCQ99895 268 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 NDC1Q9BTX1 674 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 YIPF2Q9BWQ6 316 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 NEUROD4Q9HD90 331 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 TMEM9BQ9NQ34 198 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 GIMAP4Q9NUV9 329 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 HCN4Q9Y3Q4 1203 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 GMEB1Q9Y692 573 aa18.89■□□□□ 0.61
CLN3-250ENST00000636839 TCRBV5S2A0A599 114 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 CXCR6O00574 342 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 GPR75O95800 540 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 C8BP07358 591 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 RNH1P13489 461 aaKnown RBP18.88■□□□□ 0.61
CLN3-250ENST00000636839 CPMP14384 443 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 XCR1P46094 333 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 FOXL2P58012 376 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 TMEM151BQ8IW70 566 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 LRRC25Q8N386 305 aaPredicted RBP18.88■□□□□ 0.61
CLN3-250ENST00000636839 HORMAD2Q8N7B1 307 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 FAM86B1Q8N7N1 296 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 NEURL3Q96EH8 262 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 YIPF4Q9BSR8 244 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 ENAMQ9NRM1 1142 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 ZCCHC3Q9NUD5 404 aaKnown RBP18.88■□□□□ 0.61
CLN3-250ENST00000636839 SIDT1Q9NXL6 827 aaKnown RBP18.88■□□□□ 0.61
CLN3-250ENST00000636839 CUL9Q8IWT3 2517 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 TNFRSF21O75509 655 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 ANPEPP15144 967 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 TGM1P22735 817 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 ZFP36L1Q07352 338 aaKnown RBP18.88■□□□□ 0.61
CLN3-250ENST00000636839 VMACQ2NL98 169 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 CPZQ66K79 652 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 PWWP2BQ6NUJ5 590 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 TLDC1Q6P9B6 456 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 OR7G2Q8NG99 324 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 TANKQ92844 425 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 RAB8BQ92930 207 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 TBC1D20Q96BZ9 403 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 ELP4Q96EB1 424 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 DPYSL5Q9BPU6 564 aa18.88■□□□□ 0.61
CLN3-250ENST00000636839 PORP16435 677 aaPredicted RBP18.87■□□□□ 0.61
CLN3-250ENST00000636839 MAOAP21397 527 aa18.87■□□□□ 0.61
CLN3-250ENST00000636839 PPP2R1BP30154 601 aa18.87■□□□□ 0.61
CLN3-250ENST00000636839 EMP3P54852 163 aa18.87■□□□□ 0.61
CLN3-250ENST00000636839 FAM111BQ6SJ93 734 aa18.87■□□□□ 0.61
CLN3-250ENST00000636839 WDR53Q7Z5U6 358 aaPredicted RBP18.87■□□□□ 0.61
CLN3-250ENST00000636839 ZFP28Q8NHY6 868 aa18.87■□□□□ 0.61
CLN3-250ENST00000636839 NCLNQ969V3 563 aa18.87■□□□□ 0.61
CLN3-250ENST00000636839 C16orf58Q96GQ5 468 aa18.87■□□□□ 0.61
CLN3-250ENST00000636839 MAGEL2Q9UJ55 1249 aa18.87■□□□□ 0.61
CLN3-250ENST00000636839 AP3M1Q9Y2T2 418 aa18.87■□□□□ 0.61
CLN3-250ENST00000636839 CLDN16Q9Y5I7 305 aa18.87■□□□□ 0.61
CLN3-250ENST00000636839 H0YIG0 161 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 FKBP6O75344 327 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 CREG1O75629 220 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 CCL4P13236 92 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 PPIBP23284 216 aaKnown RBP18.86■□□□□ 0.61
CLN3-250ENST00000636839 AQP1P29972 269 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 AP2B1P63010 937 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 SLC13A2Q13183 592 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 TRMT12Q53H54 448 aaKnown RBP18.86■□□□□ 0.61
CLN3-250ENST00000636839 PROSER1Q86XN7 944 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 OR5D16Q8NGK9 328 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 FBXO30Q8TB52 745 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 FANCEQ9HB96 536 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 STX18Q9P2W9 335 aaKnown RBP18.86■□□□□ 0.61
CLN3-250ENST00000636839 EFCAB7A8K855 629 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 STAMBPO95630 424 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 KRT75O95678 551 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 GP1BAP07359 652 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 ACY1Q03154 408 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 AAGABQ6PD74 315 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 ENPP6Q6UWR7 440 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 CEACAM20Q6UY09 585 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 NRG4Q8WWG1 115 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 PMEPA1Q969W9 287 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 NSMCE2Q96MF7 247 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 NCDNQ9UBB6 729 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 TRPC4Q9UBN4 977 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 BCAP29Q9UHQ4 241 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 FAF1Q9UNN5 650 aaPredicted RBP18.86■□□□□ 0.61
CLN3-250ENST00000636839 AURKCQ9UQB9 309 aa18.86■□□□□ 0.61
CLN3-250ENST00000636839 FER1L5A0AVI2 2057 aa18.85■□□□□ 0.61
CLN3-250ENST00000636839 UPK1AO00322 258 aa18.85■□□□□ 0.61
CLN3-250ENST00000636839 GCM2O75603 506 aaPredicted RBP18.85■□□□□ 0.61
CLN3-250ENST00000636839 LMNAP02545 664 aaKnown RBP18.85■□□□□ 0.61
CLN3-250ENST00000636839 MT-ND1P03886 318 aa18.85■□□□□ 0.61
CLN3-250ENST00000636839 CT62P0C5K7 136 aa18.85■□□□□ 0.61
CLN3-250ENST00000636839 EFNA3P52797 238 aa18.85■□□□□ 0.61
CLN3-250ENST00000636839 SKP1P63208 163 aa18.85■□□□□ 0.61
CLN3-250ENST00000636839 CSRP2Q16527 193 aa18.85■□□□□ 0.61
CLN3-250ENST00000636839 VWA2Q5GFL6 755 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms