RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 PLAG1Q6DJT9 500 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 RIPOR1Q6ZS17 1223 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 TICAM1Q8IUC6 712 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 MMP21Q8N119 569 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 GRHL3Q8TE85 626 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 C16orf78Q8WTQ4 265 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 ANKRD9Q96BM1 317 aaPredicted RBP16.62■□□□□ 0.25
CLN3-247ENST00000636351 TM4SF18Q96CE8 201 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 PPP1R36Q96LQ0 422 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 IMMP1LQ96LU5 166 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 C20orf27Q9GZN8 174 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 THAP1Q9NVV9 213 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 OSGIN2Q9Y236 505 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.62■□□□□ 0.25
CLN3-247ENST00000636351 CLCA3PQ9Y6N3 262 aa16.62■□□□□ 0.25
CLN3-247ENST00000636351 C1orf226A1L170 272 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 PGRMC2O15173 223 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 LRRTM2O43300 516 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 ITGAMP11215 1152 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 PIK3R1P27986 724 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 RPL14P50914 215 aaKnown RBP16.61■□□□□ 0.25
CLN3-247ENST00000636351 ZNF169Q14929 603 aaPredicted RBP16.61■□□□□ 0.25
CLN3-247ENST00000636351 ELAVL1Q15717 326 aaKnown RBP16.61■□□□□ 0.25
CLN3-247ENST00000636351 ATP6AP1LQ52LC2 224 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 NOXRED1Q6NXP6 359 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 GALNT18Q6P9A2 607 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 Q6ZSR9 355 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 TMEM132CQ8N3T6 1108 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 SIRT6Q8N6T7 355 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 C7orf57Q8NEG2 295 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 FAM76AQ8TAV0 307 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 BRIX1Q8TDN6 353 aaKnown RBP16.61■□□□□ 0.25
CLN3-247ENST00000636351 LRRC8CQ8TDW0 803 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 UCN3Q969E3 161 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 TUBGCP3Q96CW5 907 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 PPP3R2Q96LZ3 170 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 CCT7Q99832 543 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 EPS8L2Q9H6S3 715 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 KCNK13Q9HB14 408 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 INTS9Q9NV88 658 aaKnown RBP16.61■□□□□ 0.25
CLN3-247ENST00000636351 PTGFRNQ9P2B2 879 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 DLGAP4Q9Y2H0 992 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 CCL27Q9Y4X3 112 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 PCDHA9Q9Y5H5 950 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 CLDN16Q9Y5I7 305 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 CSMD1Q96PZ7 3565 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 ABCA12Q86UK0 2595 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 CRYBG3Q68DQ2 2970 aa16.61■□□□□ 0.25
CLN3-247ENST00000636351 LRBAP50851 2863 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 CACNA1DQ01668 2161 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 ATP6AP2A0A1C7CYW4 349 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 WASHC1A8K0Z3 465 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 LSM1O15116 133 aaKnown RBP16.6■□□□□ 0.25
CLN3-247ENST00000636351 DYRK3O43781 588 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 PEX11AO75192 247 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 ERAL1O75616 437 aaKnown RBP16.6■□□□□ 0.25
CLN3-247ENST00000636351 ATP6AP2O75787 350 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 GPR75O95800 540 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 EDN3P14138 238 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 ALOX15P16050 662 aaPredicted RBP16.6■□□□□ 0.25
CLN3-247ENST00000636351 PRPH2P23942 346 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 GSTM5P46439 218 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 HEPACAMQ14CZ8 416 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 XKR7Q5GH72 579 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 C1QL3Q5VWW1 255 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 LINC00696Q6ZRV3 163 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 AMER2Q8N7J2 671 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 OR4K14Q8NGD5 310 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 OR14A16Q8NHC5 309 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 M1APQ8TC57 530 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 ZNF75CPQ92670 426 aaPredicted RBP16.6■□□□□ 0.25
CLN3-247ENST00000636351 DAZLQ92904 295 aaKnown RBP16.6■□□□□ 0.25
CLN3-247ENST00000636351 KLHL29Q96CT2 875 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 METTL2AQ96IZ6 378 aaKnown RBP16.6■□□□□ 0.25
CLN3-247ENST00000636351 PELOQ9BRX2 385 aaKnown RBP16.6■□□□□ 0.25
CLN3-247ENST00000636351 PNPOQ9NVS9 261 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 SIRT5Q9NXA8 310 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 MARCOQ9UEW3 520 aaPredicted RBP16.6■□□□□ 0.25
CLN3-247ENST00000636351 GIMAP2Q9UG22 337 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 PSME2Q9UL46 239 aa16.6■□□□□ 0.25
CLN3-247ENST00000636351 A8MUI8 341 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 C17orf105B2RV13 164 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 SNNO75324 88 aaPredicted RBP16.59■□□□□ 0.25
CLN3-247ENST00000636351 KITP10721 976 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 STT3AP46977 705 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 PER3P56645 1201 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 TLR1Q15399 786 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 TERF2Q15554 542 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 C6orf163Q5TEZ5 329 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 B3GNTL1Q67FW5 361 aaPredicted RBP16.59■□□□□ 0.25
CLN3-247ENST00000636351 SLC48A1Q6P1K1 146 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 FNDC5Q8NAU1 212 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 FAR1Q8WVX9 515 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 C11orf24Q96F05 449 aaPredicted RBP16.59■□□□□ 0.25
CLN3-247ENST00000636351 RBM18Q96H35 190 aaKnown RBP16.59■□□□□ 0.25
CLN3-247ENST00000636351 C3orf30Q96M34 536 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 NUF2Q9BZD4 464 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 OR8D2Q9GZM6 311 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 MMP25Q9NPA2 562 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 MIEF1Q9NQG6 463 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms