RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CRLF3Q8IUI8 442 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 ST13P4Q8IZP2 240 aaPredicted RBP16.88■□□□□ 0.29
CLN3-239ENST00000628023 AMER2Q8N7J2 671 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 CLEC18CQ8NCF0 446 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 B3GNT7Q8NFL0 401 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 PPWD1Q96BP3 646 aaKnown RBP16.88■□□□□ 0.29
CLN3-239ENST00000628023 MYNNQ9NPC7 610 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 GIMAP4Q9NUV9 329 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 PTGFRNQ9P2B2 879 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 HEY2Q9UBP5 337 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 COPS7AQ9UBW8 275 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 GIMAP2Q9UG22 337 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 UTS2RQ9UKP6 389 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 ENTPD4Q9Y227 616 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 ZNF780BQ9Y6R6 833 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 TRBV11-1A0A0K0K1C0 115 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 A8MUI8 341 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 DPM1O60762 260 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 PDGFAP04085 211 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 GP1BBP13224 206 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 XKP51811 444 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 CRB2Q5IJ48 1285 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 ARFGAP2Q8N6H7 521 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 GALNT11Q8NCW6 608 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 CPT1CQ8TCG5 803 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 TM9SF4Q92544 642 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 NCLNQ969V3 563 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 EXOSC8Q96B26 276 aaKnown RBP16.87■□□□□ 0.29
CLN3-239ENST00000628023 VMP1Q96GC9 406 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 TSSK3Q96PN8 268 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 C1orf50Q9BV19 199 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 CNPPD1Q9BV87 410 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 OR8D2Q9GZM6 311 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 EPS8L2Q9H6S3 715 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 ZNF552Q9H707 407 aaPredicted RBP16.87■□□□□ 0.29
CLN3-239ENST00000628023 TEKT2Q9UIF3 430 aa16.87■□□□□ 0.29
CLN3-239ENST00000628023 WBP11Q9Y2W2 641 aaKnown RBP16.87■□□□□ 0.29
CLN3-239ENST00000628023 TRPC5OSA6NMA1 111 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 SLCO1B7G3V0H7 640 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 HDAC3O15379 428 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 SLC35E2P0CK97 266 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 SDC1P18827 310 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 CSNK2A2P19784 350 aaPredicted RBP16.86■□□□□ 0.29
CLN3-239ENST00000628023 DDCP20711 480 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 NT5EP21589 574 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 TACR1P25103 407 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 FEN1P39748 380 aaKnown RBP16.86■□□□□ 0.29
CLN3-239ENST00000628023 CLCN2P51788 898 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 HK2P52789 917 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 MAD2L1Q13257 205 aaPredicted RBP16.86■□□□□ 0.29
CLN3-239ENST00000628023 C6orf136Q5SQH8 315 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 LINC00696Q6ZRV3 163 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 KIF2BQ8N4N8 673 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 SLC5A8Q8N695 610 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 MORN4Q8NDC4 146 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 NFAM1Q8NET5 270 aaPredicted RBP16.86■□□□□ 0.29
CLN3-239ENST00000628023 CLHC1Q8NHS4 586 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 PTPMT1Q8WUK0 201 aaPredicted RBP16.86■□□□□ 0.29
CLN3-239ENST00000628023 RIT1Q92963 219 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 GFM2Q969S9 779 aaKnown RBP16.86■□□□□ 0.29
CLN3-239ENST00000628023 ART5Q96L15 291 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 FCRL1Q96LA6 429 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 SMAD5Q99717 465 aaKnown RBP16.86■□□□□ 0.29
CLN3-239ENST00000628023 CES1P1Q9UKY3 287 aa16.86■□□□□ 0.29
CLN3-239ENST00000628023 EIF3LQ9Y262 564 aaKnown RBP16.86■□□□□ 0.29
CLN3-239ENST00000628023 A0A1W2PS29 197 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 DYNC1I1O14576 645 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 LRATO95237 230 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 CPMP14384 443 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 PORP16435 677 aaPredicted RBP16.85■□□□□ 0.29
CLN3-239ENST00000628023 ASMTP46597 345 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 ZNF750Q32MQ0 723 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 ABHD17BQ5VST6 288 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 B3GNTL1Q67FW5 361 aaPredicted RBP16.85■□□□□ 0.29
CLN3-239ENST00000628023 FCRLBQ6BAA4 426 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 FAM71E1Q6IPT2 247 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 FAM180BQ6P0A1 224 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 ISLR2Q6UXK2 745 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 TICAM1Q8IUC6 712 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 GALNT12Q8IXK2 581 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 SAMD14Q8IZD0 417 aaPredicted RBP16.85■□□□□ 0.29
CLN3-239ENST00000628023 LRRC25Q8N386 305 aaPredicted RBP16.85■□□□□ 0.29
CLN3-239ENST00000628023 LIX1Q8N485 282 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 PIWIL2Q8TC59 973 aaKnown RBP16.85■□□□□ 0.29
CLN3-239ENST00000628023 SLC2A12Q8TD20 617 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 MAGEB18Q96M61 343 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 C7orf26Q96N11 449 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 BBS4Q96RK4 519 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 DEFB126Q9BYW3 111 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 AKTIPQ9H8T0 292 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 EHD3Q9NZN3 535 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 ABI3Q9P2A4 366 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 DOCK10Q96BY6 2186 aa16.85■□□□□ 0.29
CLN3-239ENST00000628023 TNRC6AQ8NDV7 1962 aaKnown RBP16.84■□□□□ 0.29
CLN3-239ENST00000628023 AKAP10O43572 662 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 PRPS2P11908 318 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 BCKDHAP12694 445 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 HPCAL1P37235 193 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 ERVK-8P63133 956 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 MFAP5Q13361 173 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms