RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 CCDC116Q8IYX3 515 aa20.82■□□□□ 0.92
PNKP-220ENST00000627232 TMIGD2Q96BF3 282 aa20.82■□□□□ 0.92
PNKP-220ENST00000627232 C10orf90Q96M02 699 aa20.82■□□□□ 0.92
PNKP-220ENST00000627232 SLC6A18Q96N87 628 aa20.82■□□□□ 0.92
PNKP-220ENST00000627232 PITX2Q99697 317 aa20.82■□□□□ 0.92
PNKP-220ENST00000627232 APOL4Q9BPW4 351 aa20.82■□□□□ 0.92
PNKP-220ENST00000627232 TUBA1CQ9BQE3 449 aa20.82■□□□□ 0.92
PNKP-220ENST00000627232 GABARAPL3Q9BY60 117 aa20.82■□□□□ 0.92
PNKP-220ENST00000627232 C3orf14Q9HBI5 128 aa20.82■□□□□ 0.92
PNKP-220ENST00000627232 BCL2L10Q9HD36 194 aa20.82■□□□□ 0.92
PNKP-220ENST00000627232 HRASLS2Q9NWW9 162 aa20.82■□□□□ 0.92
PNKP-220ENST00000627232 TRPC4Q9UBN4 977 aa20.82■□□□□ 0.92
PNKP-220ENST00000627232 NDRG4Q9ULP0 352 aaKnown RBP20.82■□□□□ 0.92
PNKP-220ENST00000627232 GMPPBQ9Y5P6 360 aa20.82■□□□□ 0.92
PNKP-220ENST00000627232 B3GALT2O43825 422 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 ABCB7O75027 752 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 SERPINB7O75635 380 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 RECKO95980 971 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 IL7RP16871 459 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 JUNBP17275 347 aaPredicted RBP20.81■□□□□ 0.92
PNKP-220ENST00000627232 YAP1P46937 504 aaKnown RBP20.81■□□□□ 0.92
PNKP-220ENST00000627232 PRR5P85299 388 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 IL1RL1Q01638 556 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 DUSP2Q05923 314 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 DUSP7Q16829 419 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 MICAQ29983 383 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 PRAMEF8Q5VWM4 474 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 PRAMEF7Q5VXH5 474 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 OOSP2Q86WS3 158 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 ZNF655Q8N720 491 aaPredicted RBP20.81■□□□□ 0.92
PNKP-220ENST00000627232 FRMD1Q8N878 549 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 OR10G2Q8NGC3 310 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 BBS10Q8TAM1 723 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 PROX1Q92786 737 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 RERGQ96A58 199 aaPredicted RBP20.81■□□□□ 0.92
PNKP-220ENST00000627232 DNAAF2Q9NVR5 837 aaKnown RBP20.81■□□□□ 0.92
PNKP-220ENST00000627232 MS4A12Q9NXJ0 267 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 KCMF1Q9P0J7 381 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 RSL24D1Q9UHA3 163 aaKnown RBP20.81■□□□□ 0.92
PNKP-220ENST00000627232 SH3GLB1Q9Y371 365 aa20.81■□□□□ 0.92
PNKP-220ENST00000627232 AXIN1O15169 862 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 ZSCAN9O15535 394 aaPredicted RBP20.8■□□□□ 0.92
PNKP-220ENST00000627232 CCDC159P0C7I6 412 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 CPN2P22792 545 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 EEF1B2P24534 225 aaKnown RBP20.8■□□□□ 0.92
PNKP-220ENST00000627232 CD27P26842 260 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 LIMS1P48059 325 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 KCNJ5P48544 419 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 CDH12P55289 794 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 NPRL3Q12980 569 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 CDK5R2Q13319 367 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 SIM2Q14190 667 aaPredicted RBP20.8■□□□□ 0.92
PNKP-220ENST00000627232 GPR19Q15760 415 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 LEXMQ3ZCV2 418 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 SZRD1Q7Z422 152 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 TSPYL5Q86VY4 417 aaPredicted RBP20.8■□□□□ 0.92
PNKP-220ENST00000627232 KRT73Q86Y46 540 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 SLC44A2Q8IWA5 706 aaPredicted RBP20.8■□□□□ 0.92
PNKP-220ENST00000627232 AVL9Q8NBF6 648 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 ZDHHC1Q8WTX9 485 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 XAGE5Q8WWM1 108 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 RLN3Q8WXF3 142 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 KLHL6Q8WZ60 621 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 HLA-CQ95604 372 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 NMD3Q96D46 503 aaKnown RBP20.8■□□□□ 0.92
PNKP-220ENST00000627232 TPSD1Q9BZJ3 242 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 VCX3AQ9NNX9 186 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 ACER3Q9NUN7 267 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 EVA1BQ9NVM1 165 aa20.8■□□□□ 0.92
PNKP-220ENST00000627232 GPC6Q9Y625 555 aaPredicted RBP20.8■□□□□ 0.92
PNKP-220ENST00000627232 ARRDC5A6NEK1 342 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 OR5K3A6NET4 321 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 METTL12A8MUP2 240 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 H0YGG7 62 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 ZNF701M0R085 212 aaPredicted RBP20.79■□□□□ 0.92
PNKP-220ENST00000627232 NDUFS2O75306 463 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 CPNE6O95741 557 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 NR2F1P10589 423 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 JUNDP17535 347 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 FEN1P39748 380 aaKnown RBP20.79■□□□□ 0.92
PNKP-220ENST00000627232 LSSP48449 732 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 PXNP49023 591 aaPredicted RBP20.79■□□□□ 0.92
PNKP-220ENST00000627232 CRISP3P54108 245 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 NUP107P57740 925 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 CXCR4P61073 352 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 ARF3P61204 181 aaPredicted RBP20.79■□□□□ 0.92
PNKP-220ENST00000627232 IL5RAQ01344 420 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 HHEXQ03014 270 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 PUM1Q14671 1186 aaKnown RBP eCLIP20.79■□□□□ 0.92
PNKP-220ENST00000627232 EXOC3L2Q2M3D2 409 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 ZNF750Q32MQ0 723 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 LAIR2Q6ISS4 152 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 KCTD8Q6ZWB6 473 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 GALNT15Q8N3T1 639 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 FAM160A2Q8N612 972 aaPredicted RBP20.79■□□□□ 0.92
PNKP-220ENST00000627232 GPR32P1Q8NGA4 272 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 ZCCHC10Q8TBK6 192 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 ZNF354BQ96LW1 612 aa20.79■□□□□ 0.92
PNKP-220ENST00000627232 TREX2Q9BQ50 279 aaPredicted RBP20.79■□□□□ 0.92
PNKP-220ENST00000627232 LRRC61Q9BV99 259 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms