RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 RBM18Q96H35 190 aaKnown RBP13.44□□□□□ -0.26
UPF1-211ENST00000600868 CCDC115Q96NT0 180 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 AMDHD1Q96NU7 426 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 DGAT2Q96PD7 388 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 RMND5AQ9H871 391 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 GPN2Q9H9Y4 310 aaPredicted RBP13.44□□□□□ -0.26
UPF1-211ENST00000600868 ADAP2Q9NPF8 381 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 SLAMF7Q9NQ25 335 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 C19orf25Q9UFG5 118 aaPredicted RBP13.44□□□□□ -0.26
UPF1-211ENST00000600868 BTNL2Q9UIR0 455 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 NDUFAF1Q9Y375 327 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 CACNA1AO00555 2505 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 AKAP13Q12802 2813 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 LOC102723996A0A087X1L8 192 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 MYOCOSA0A1B0GUC4 107 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 ASPDHA6ND91 283 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 ANGPT2O15123 496 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 OR10H2O60403 315 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 SLITRK5O94991 958 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 COX4I1P13073 169 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 LIFP15018 202 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 MMP11P24347 488 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 NCBP2P52298 156 aaKnown RBP eCLIP13.43□□□□□ -0.26
UPF1-211ENST00000600868 RPS18P62269 152 aaKnown RBP13.43□□□□□ -0.26
UPF1-211ENST00000600868 STX5Q13190 355 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 MAPKAPK3Q16644 382 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 COQ5Q5HYK3 327 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 ERMP1Q7Z2K6 904 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 SNX32Q86XE0 403 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 ZNF248Q8NDW4 579 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 GOT1L1Q8NHS2 421 aaPredicted RBP13.43□□□□□ -0.26
UPF1-211ENST00000600868 PSMA8Q8TAA3 256 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 OR5P2Q8WZ92 322 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 IL17BQ9UHF5 180 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 LEF1Q9UJU2 399 aaPredicted RBP13.43□□□□□ -0.26
UPF1-211ENST00000600868 MAN2B2Q9Y2E5 1009 aa13.43□□□□□ -0.26
UPF1-211ENST00000600868 LOC100653049A0A140TA62 436 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 A0A1W2PQ72 361 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 CCT8L1PA6NM43 557 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 BBIP1A8MTZ0 92 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 TLX3O43711 291 aaPredicted RBP13.42□□□□□ -0.26
UPF1-211ENST00000600868 CREG1O75629 220 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 KRT34O76011 436 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 C6orf47O95873 294 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 IFNA16P05015 189 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 IFI6P09912 130 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 EFNA1P20827 205 aaPredicted RBP13.42□□□□□ -0.26
UPF1-211ENST00000600868 TRPC1P48995 793 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 OR4D2P58180 307 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 MAP4K2Q12851 820 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 ELAVL1Q15717 326 aaKnown RBP13.42□□□□□ -0.26
UPF1-211ENST00000600868 SPRED3Q2MJR0 410 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 FAAH2Q6GMR7 532 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 LANCL3Q6ZV70 420 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 ZNF551Q7Z340 670 aaPredicted RBP13.42□□□□□ -0.26
UPF1-211ENST00000600868 CPEB2Q7Z5Q1 589 aaKnown RBP13.42□□□□□ -0.26
UPF1-211ENST00000600868 ANKRD46Q86W74 232 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 DPP10Q8N608 796 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 ZNF675Q8TD23 568 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 KCNE4Q8WWG9 221 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 GTF2H4Q92759 462 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 RIT1Q92963 219 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 PPWD1Q96BP3 646 aaKnown RBP13.42□□□□□ -0.26
UPF1-211ENST00000600868 ITCHQ96J02 903 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 DPH1Q9BZG8 443 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 CCDC86Q9H6F5 360 aaKnown RBP13.42□□□□□ -0.26
UPF1-211ENST00000600868 CXorf21Q9HAI6 301 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 NEUROD4Q9HD90 331 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 SERHLQ9NQF3 203 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 PNO1Q9NRX1 252 aaKnown RBP13.42□□□□□ -0.26
UPF1-211ENST00000600868 TAS2R9Q9NYW1 312 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 PCDHGB4Q9UN71 923 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 HS3ST3B1Q9Y662 390 aa13.42□□□□□ -0.26
UPF1-211ENST00000600868 PLOD2O00469 737 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 FBP2O00757 339 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 SOCS6O14544 535 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 CAPNS1P04632 268 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 NT5EP21589 574 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 HBA1P69905 142 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 MGAT2Q10469 447 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 PRICKLE4Q2TBC4 344 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 MMEL1Q495T6 779 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 SFT2D3Q587I9 215 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 ZNF628Q5EBL2 1059 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 PAGE3Q5JUK9 113 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 SLC2A7Q6PXP3 512 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 C6orf89Q6UWU4 347 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 DGAT2L6Q6ZPD8 337 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 PPP1R32Q7Z5V6 425 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 VASH2Q86V25 355 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 RETREG3Q86VR2 466 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 GALNT12Q8IXK2 581 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 CLECL1Q8IZS7 167 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 POU5F2Q8N7G0 328 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 OR9A2Q8NGT5 310 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 OR14A16Q8NHC5 309 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 DNAJB8Q8NHS0 232 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 PTPMT1Q8WUK0 201 aaPredicted RBP13.41□□□□□ -0.26
UPF1-211ENST00000600868 CTHRC1Q96CG8 243 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 VPS50Q96JG6 964 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms