RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 KCNK10P57789 538 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 MXRA7P84157 204 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 RCAN2Q14206 197 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 WASHC2DQ5SRD0 308 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 AGAP7PQ5VUJ5 663 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 YOD1Q5VVQ6 348 aaPredicted RBP11.9□□□□□ -0.5
UPF1-208ENST00000600012 OR4C11Q6IEV9 310 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 RINLQ6ZS11 566 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 TTLL10Q6ZVT0 673 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 OVCH1Q7RTY7 1134 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 PAGE2Q7Z2X7 111 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 MMP21Q8N119 569 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 VPS33AQ96AX1 596 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 SLC7A6OSQ96CW6 309 aaPredicted RBP11.9□□□□□ -0.5
UPF1-208ENST00000600012 SPDL1Q96EA4 605 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 VPS50Q96JG6 964 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 AGAP4Q96P64 663 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 KCNC2Q96PR1 638 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 NPAS2Q99743 824 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 TUBB6Q9BUF5 446 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 SLC26A1Q9H2B4 701 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 COPS7BQ9H9Q2 264 aaPredicted RBP11.9□□□□□ -0.5
UPF1-208ENST00000600012 PRDM7Q9NQW5 492 aa11.9□□□□□ -0.5
UPF1-208ENST00000600012 NXT1Q9UKK6 140 aaKnown RBP11.9□□□□□ -0.5
UPF1-208ENST00000600012 ASPDHA6ND91 283 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 CCDC154A6NI56 674 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 B2RBV5 119 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 FBP2O00757 339 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 AIM2O14862 343 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 DSCR3O14972 297 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 ATP5HO75947 161 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 SMIM10L1P0DMW3 83 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 IL1RNP18510 177 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 ITGAXP20702 1163 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 HIST1H1TP22492 207 aaPredicted RBP11.89□□□□□ -0.51
UPF1-208ENST00000600012 ATP5A1P25705 553 aaKnown RBP11.89□□□□□ -0.51
UPF1-208ENST00000600012 HPCAL1P37235 193 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 TSFMP43897 325 aaKnown RBP11.89□□□□□ -0.51
UPF1-208ENST00000600012 ASMTP46597 345 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 DGKQP52824 942 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 MAPK12P53778 367 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 CLNS1AP54105 237 aaKnown RBP11.89□□□□□ -0.51
UPF1-208ENST00000600012 HNRNPH2P55795 449 aaKnown RBP11.89□□□□□ -0.51
UPF1-208ENST00000600012 PER3P56645 1201 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 TAS2R50P59544 299 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 BTN3A2P78410 334 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 TGM3Q08188 693 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 GRM7Q14831 915 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 NKG7Q16617 165 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 FAM174BQ3ZCQ3 159 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 VPS26BQ4G0F5 336 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 TCTE1Q5JU00 501 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 SPANXN4Q5MJ08 99 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 B3GNTL1Q67FW5 361 aaPredicted RBP11.89□□□□□ -0.51
UPF1-208ENST00000600012 ANKRD26P1Q6NSI1 321 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 TMEM214Q6NUQ4 689 aaKnown RBP11.89□□□□□ -0.51
UPF1-208ENST00000600012 IGFL2Q6UWQ7 119 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 PRSS41Q7RTY9 318 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 RETREG3Q86VR2 466 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 TICAM1Q8IUC6 712 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 TMEM151BQ8IW70 566 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 RIMKLAQ8IXN7 391 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 FAM9CQ8IZT9 166 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 GLB1L3Q8NCI6 653 aaPredicted RBP11.89□□□□□ -0.51
UPF1-208ENST00000600012 SMIM10Q96HG1 83 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 QRFPRQ96P65 431 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 SPSB2Q99619 263 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 TBCDQ9BTW9 1192 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 EPS8L2Q9H6S3 715 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 DDX31Q9H8H2 851 aaKnown RBP11.89□□□□□ -0.51
UPF1-208ENST00000600012 MYNNQ9NPC7 610 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 SLC52A3Q9NQ40 469 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 CUTCQ9NTM9 273 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 ADAM29Q9UKF5 820 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 EXO1Q9UQ84 846 aaKnown RBP11.89□□□□□ -0.51
UPF1-208ENST00000600012 CSAG2Q9Y5P2 127 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 HS3ST3B1Q9Y662 390 aa11.89□□□□□ -0.51
UPF1-208ENST00000600012 URADA6NGE7 173 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 ZNF860A6NHJ4 632 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 SOCS6O14544 535 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 MRASO14807 208 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 ANGPT2O15123 496 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 SCAMP2O15127 329 aaKnown RBP11.88□□□□□ -0.51
UPF1-208ENST00000600012 PRMT3O60678 531 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 ALOX12BO75342 701 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 MED26O95402 600 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 COX7A2P14406 83 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 ALOX12P18054 663 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 NUDT2P50583 147 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 SLC25A3Q00325 362 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 KLC1Q07866 573 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 C2orf80Q0P641 193 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 PRTGQ2VWP7 1150 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 PGS1Q32NB8 556 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 MMEL1Q495T6 779 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 DEFB134Q4QY38 66 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 FAM71E1Q6IPT2 247 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 SLC2A7Q6PXP3 512 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 KIRREL2Q6UWL6 708 aa11.88□□□□□ -0.51
UPF1-208ENST00000600012 COX15Q7KZN9 410 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms