RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 TMEM81Q6P7N7 255 aa13.38□□□□□ -0.27
SMARCE1-216ENST00000580419 ADGRD1Q6QNK2 874 aa13.38□□□□□ -0.27
SMARCE1-216ENST00000580419 CYP20A1Q6UW02 462 aa13.38□□□□□ -0.27
SMARCE1-216ENST00000580419 C16orf47Q6ZP98 133 aaPredicted RBP13.38□□□□□ -0.27
SMARCE1-216ENST00000580419 LRRC25Q8N386 305 aaPredicted RBP13.38□□□□□ -0.27
SMARCE1-216ENST00000580419 FBXW8Q8N3Y1 598 aa13.38□□□□□ -0.27
SMARCE1-216ENST00000580419 MARVELD2Q8N4S9 558 aa13.38□□□□□ -0.27
SMARCE1-216ENST00000580419 ZNF321PQ8N8H1 164 aa13.38□□□□□ -0.27
SMARCE1-216ENST00000580419 ZNF441Q8N8Z8 693 aa13.38□□□□□ -0.27
SMARCE1-216ENST00000580419 RIT1Q92963 219 aa13.38□□□□□ -0.27
SMARCE1-216ENST00000580419 SDCCAG3Q96C92 435 aa13.38□□□□□ -0.27
SMARCE1-216ENST00000580419 LURAP1Q96LR2 239 aa13.38□□□□□ -0.27
SMARCE1-216ENST00000580419 FMO2Q99518 471 aa13.38□□□□□ -0.27
SMARCE1-216ENST00000580419 PCTPQ9UKL6 214 aa13.38□□□□□ -0.27
SMARCE1-216ENST00000580419 BOKQ9UMX3 212 aaPredicted RBP13.38□□□□□ -0.27
SMARCE1-216ENST00000580419 HRH3Q9Y5N1 445 aa13.38□□□□□ -0.27
SMARCE1-216ENST00000580419 ESYT3A0FGR9 886 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 PINLYPA6NC86 204 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 OR7A17O14581 309 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 TMPRSS11DO60235 418 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 GABRA1P14867 456 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 NAGAP17050 411 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 ACVR2AP27037 513 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 GMPRP36959 345 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 TMED10P49755 219 aaKnown RBP13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 SLC7A5Q01650 507 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 PLGLB1Q02325 96 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 TFF3Q07654 80 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 ASPHQ12797 758 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 DDX39BQ13838 428 aaKnown RBP13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 EBPQ15125 230 aaKnown RBP13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 CDSNQ15517 529 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 C18orf63Q68DL7 685 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 RNF111Q6ZNA4 994 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 TIFABQ6ZNK6 161 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 FAM47EQ6ZV65 393 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 SRRM1Q8IYB3 904 aaKnown RBP13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 TAGAPQ8N103 731 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 TMEM251Q8N6I4 163 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 OR7G1Q8NGA0 311 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 SARAFQ96BY9 339 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 NTNG2Q96CW9 530 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 SHCBP1LQ9BZQ2 653 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 WWTR1Q9GZV5 400 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 MRPL46Q9H2W6 279 aaKnown RBP13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 CDC42EP4Q9H3Q1 356 aaKnown RBP13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 NOL11Q9H8H0 719 aaKnown RBP13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 CXorf21Q9HAI6 301 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 ZFP64Q9NPA5 681 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 NMRK1Q9NWW6 199 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 FETUBQ9UGM5 382 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 RNF11Q9Y3C5 154 aa13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 CHCHD2Q9Y6H1 151 aaPredicted RBP13.37□□□□□ -0.27
SMARCE1-216ENST00000580419 SAP18O00422 153 aaKnown RBP13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 OR10H2O60403 315 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 CDC40O60508 579 aaKnown RBP eCLIP13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 SMIM24O75264 130 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 EEDO75530 441 aaKnown RBP13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 SNX4O95219 450 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 SIX3O95343 332 aaPredicted RBP13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 OTCP00480 354 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 RPS17P08708 135 aaKnown RBP13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 ABHD2P08910 425 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 CCL3P10147 92 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 HSD3B1P14060 373 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 HSD3B2P26439 372 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 PEX19P40855 299 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 RFC3P40938 356 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 CCNG1P51959 295 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 TRA2BP62995 288 aaKnown RBP13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 PSPHP78330 225 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 TRAF3Q13114 568 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 ZNF750Q32MQ0 723 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 LGSNQ5TDP6 509 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 MYLK4Q86YV6 388 aaPredicted RBP13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 PLD6Q8N2A8 252 aaKnown RBP13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 METTL4Q8N3J2 472 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 TMEM151AQ8N4L1 468 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 PTGR2Q8N8N7 351 aaPredicted RBP13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 ERP27Q96DN0 273 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 MTBPQ96DY7 904 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 SMC6Q96SB8 1091 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 PAFAH2Q99487 392 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 DEFB127Q9H1M4 99 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 ZNF703Q9H7S9 590 aaPredicted RBP13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 LIN28AQ9H9Z2 209 aaKnown RBP13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 MCCC2Q9HCC0 563 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 ZBTB26Q9HCK0 441 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 CPSF2Q9P2I0 782 aaKnown RBP13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 CFL2Q9Y281 166 aa13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.36□□□□□ -0.27
SMARCE1-216ENST00000580419 A0A087WUV0 522 aaPredicted RBP13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 A0A0G2JMM0 328 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 A0A1W2PPB8 328 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 A0A1W2PRS3 328 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 C1orf226A1L170 272 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 KIR3DP1A8MWS1 328 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 C19orf84I3L1E1 186 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 KIF2AO00139 706 aaPredicted RBP13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 TP53I11O14683 189 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms