RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 BSGP35613 385 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 DEKP35659 375 aaKnown RBP7.53□□□□□ -1.2
VPS53-214ENST00000572607 HSD17B3P37058 310 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 GPR143P51810 404 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 MAPK12P53778 367 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 PRKAA2P54646 552 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 CASP6P55212 293 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 PKNOX1P55347 436 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 HNRNPH2P55795 449 aaKnown RBP7.53□□□□□ -1.2
VPS53-214ENST00000572607 PMP22Q01453 160 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 FOLH1Q04609 750 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 CSTF3Q12996 717 aaKnown RBP7.53□□□□□ -1.2
VPS53-214ENST00000572607 LCP2Q13094 533 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 UNC50Q53HI1 259 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 C18orf63Q68DL7 685 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 ZYG11AQ6WRX3 759 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 GALNTL5Q7Z4T8 443 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 ST13P4Q8IZP2 240 aaPredicted RBP7.53□□□□□ -1.2
VPS53-214ENST00000572607 ARMC10Q8N2F6 343 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 RIBC1Q8N443 379 aaPredicted RBP7.53□□□□□ -1.2
VPS53-214ENST00000572607 CCNYL1Q8N7R7 359 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 CDYL2Q8N8U2 506 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 POGLUT1Q8NBL1 392 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 OR8K3Q8NH51 312 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 SLC22A8Q8TCC7 542 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 SLC2A12Q8TD20 617 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 EPS8L3Q8TE67 593 aaKnown RBP7.53□□□□□ -1.2
VPS53-214ENST00000572607 PTPMT1Q8WUK0 201 aaPredicted RBP7.53□□□□□ -1.2
VPS53-214ENST00000572607 ANKRD9Q96BM1 317 aaPredicted RBP7.53□□□□□ -1.2
VPS53-214ENST00000572607 TMEM237Q96Q45 408 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 ZNF382Q96SR6 550 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 CNPPD1Q9BV87 410 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 FAIM2Q9BWQ8 316 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 MRPL1Q9BYD6 325 aaKnown RBP7.53□□□□□ -1.2
VPS53-214ENST00000572607 ANKZF1Q9H8Y5 726 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 SUCOQ9UBS9 1254 aaKnown RBP7.53□□□□□ -1.2
VPS53-214ENST00000572607 ATG4BQ9Y4P1 393 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 ASB4Q9Y574 426 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 CLDN16Q9Y5I7 305 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 RP1L1Q8IWN7 2480 aaPredicted RBP7.53□□□□□ -1.2
VPS53-214ENST00000572607 CSMD2Q7Z408 3487 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 TRGV8A0A0C4DH27 118 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 A0A1W2PPM1 405 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 A0A1W2PR48 441 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 C1orf226A1L170 272 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 ASPDHA6ND91 283 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 GLOD5A6NK44 160 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 ACOT7O00154 380 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 WWP2O00308 870 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 MANBAO00462 879 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 SEMA7AO75326 666 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 PRKRAO75569 313 aaKnown RBP7.52□□□□□ -1.21
VPS53-214ENST00000572607 OR2J2O76002 312 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 IL2RAP01589 272 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 GBAP04062 536 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 SLC35E2P0CK97 266 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 KRT4P19013 534 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 CRHR1P34998 444 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 ST13P50502 369 aaKnown RBP7.52□□□□□ -1.21
VPS53-214ENST00000572607 TDGF1P3P51864 188 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 VSNL1P62760 191 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 ERVK-8P63133 956 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 RNF4P78317 190 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 IGLV3-21P80748 117 aaPredicted RBP7.52□□□□□ -1.21
VPS53-214ENST00000572607 ASPHQ12797 758 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 IMPG1Q17R60 797 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 SPRED3Q2MJR0 410 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 KRTCAP3Q53RY4 240 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 NDUFAF5Q5TEU4 345 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 ZNF468Q5VIY5 522 aaPredicted RBP7.52□□□□□ -1.21
VPS53-214ENST00000572607 ZNF324BQ6AW86 544 aaPredicted RBP7.52□□□□□ -1.21
VPS53-214ENST00000572607 MRM1Q6IN84 353 aaKnown RBP7.52□□□□□ -1.21
VPS53-214ENST00000572607 LETMD1Q6P1Q0 360 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 EMBQ6PCB8 327 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 OPN5Q6U736 354 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 RNF111Q6ZNA4 994 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 RTL4Q6ZR62 310 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 RPS27LQ71UM5 84 aaKnown RBP7.52□□□□□ -1.21
VPS53-214ENST00000572607 SLC29A4Q7RTT9 530 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 COMMD6Q7Z4G1 85 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.52□□□□□ -1.21
VPS53-214ENST00000572607 GALNT12Q8IXK2 581 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 METTL4Q8N3J2 472 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 GBP7Q8N8V2 638 aaPredicted RBP7.52□□□□□ -1.21
VPS53-214ENST00000572607 OR4K14Q8NGD5 310 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 RDH11Q8TC12 318 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 MZB1Q8WU39 189 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 RIT1Q92963 219 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 PPWD1Q96BP3 646 aaKnown RBP7.52□□□□□ -1.21
VPS53-214ENST00000572607 L3HYPDHQ96EM0 354 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 SENP5Q96HI0 755 aaPredicted RBP7.52□□□□□ -1.21
VPS53-214ENST00000572607 FBXL20Q96IG2 436 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 MAGED4Q96JG8 741 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 GAL3ST4Q96RP7 486 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 ZNF717Q9BY31 904 aaPredicted RBP7.52□□□□□ -1.21
VPS53-214ENST00000572607 HES7Q9BYE0 225 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 TRIM45Q9H8W5 580 aaPredicted RBP7.52□□□□□ -1.21
VPS53-214ENST00000572607 MID1IP1Q9NPA3 183 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 MYOTQ9UBF9 498 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 VPS29Q9UBQ0 182 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms