RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 OR4F21O95013 312 aa19.17■□□□□ 0.66
CLN3-219ENST00000565778 TPOP07202 933 aa19.17■□□□□ 0.66
CLN3-219ENST00000565778 SPRED3Q2MJR0 410 aa19.17■□□□□ 0.66
CLN3-219ENST00000565778 UNC50Q53HI1 259 aa19.17■□□□□ 0.66
CLN3-219ENST00000565778 ZNF678Q5SXM1 525 aa19.17■□□□□ 0.66
CLN3-219ENST00000565778 NDUFAF5Q5TEU4 345 aa19.17■□□□□ 0.66
CLN3-219ENST00000565778 GK5Q6ZS86 529 aa19.17■□□□□ 0.66
CLN3-219ENST00000565778 LCA5Q86VQ0 697 aa19.17■□□□□ 0.66
CLN3-219ENST00000565778 SLC15A4Q8N697 577 aa19.17■□□□□ 0.66
CLN3-219ENST00000565778 GAL3ST4Q96RP7 486 aa19.17■□□□□ 0.66
CLN3-219ENST00000565778 DLX3O60479 287 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 GUCY1B2O75343 617 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 PYGBP11216 843 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 ATP5F1P24539 256 aaPredicted RBP19.16■□□□□ 0.66
CLN3-219ENST00000565778 HTR1EP28566 365 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 GALNSP34059 522 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 XKP51811 444 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 MAPK12P53778 367 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 ZNF791Q3KP31 576 aaPredicted RBP19.16■□□□□ 0.66
CLN3-219ENST00000565778 SLC22A10Q63ZE4 541 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 RGS9BPQ6ZS82 235 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 COMMD6Q7Z4G1 85 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 SLC22A16Q86VW1 577 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 EID3Q8N140 333 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 FAM57AQ8TBR7 257 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 ACMSDQ8TDX5 336 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 MARVELD3Q96A59 401 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 TXLNGYQ9BZA5 131 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 BRF2Q9HAW0 419 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 PSMC3IPQ9P2W1 217 aaPredicted RBP19.16■□□□□ 0.66
CLN3-219ENST00000565778 TRPS1Q9UHF7 1281 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 NBPF19A0A087WUL8 3843 aa19.16■□□□□ 0.66
CLN3-219ENST00000565778 A0A0G2JMM0 328 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 A0A1W2PPB8 328 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 A0A1W2PRS3 328 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 A0A1W2PS29 197 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 OR6C76A6NM76 312 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 KIR3DP1A8MWS1 328 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 E9PLN8 166 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 CCL3P10147 92 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 IMPDH1P20839 514 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 AGAP20933 346 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 GRNP28799 593 aaKnown RBP19.15■□□□□ 0.66
CLN3-219ENST00000565778 DEKP35659 375 aaKnown RBP19.15■□□□□ 0.66
CLN3-219ENST00000565778 SLC37A1P57057 533 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 ARHGAP11AQ6P4F7 1023 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 NCCRP1Q6ZVX7 275 aaPredicted RBP19.15■□□□□ 0.66
CLN3-219ENST00000565778 CDYL2Q8N8U2 506 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 VKORC1Q9BQB6 163 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 TTTY12Q9BZ98 90 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 WWTR1Q9GZV5 400 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 RUBCNLQ9H714 662 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 CXorf21Q9HAI6 301 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 CHST11Q9NPF2 352 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 FETUBQ9UGM5 382 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 DCDC2Q9UHG0 476 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 ZNF225Q9UK10 706 aa19.15■□□□□ 0.66
CLN3-219ENST00000565778 UNC79Q9P2D8 2635 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 KRT6AP02538 564 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 KRT6BP04259 564 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 GSTA1P08263 222 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 NT5EP21589 574 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 SERPINB3P29508 390 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 SSTR4P31391 388 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 PIGAP37287 484 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 KRT6CP48668 564 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 DNASE1L1P49184 302 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 RASA2Q15283 850 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 C6orf163Q5TEZ5 329 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 SLC22A9Q8IVM8 553 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 GSPT2Q8IYD1 628 aaKnown RBP19.14■□□□□ 0.65
CLN3-219ENST00000565778 CNPY4Q8N129 248 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 METTL6Q8TCB7 284 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 HBEGFQ99075 208 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 IL1RL2Q9HB29 575 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 VPS29Q9UBQ0 182 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 PCDHA9Q9Y5H5 950 aa19.14■□□□□ 0.65
CLN3-219ENST00000565778 C2orf92A0A1B0GVN3 265 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 C1orf226A1L170 272 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 MANBAO00462 879 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 ULK1O75385 1050 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 NADKO95544 446 aaPredicted RBP19.13■□□□□ 0.65
CLN3-219ENST00000565778 PORP16435 677 aaPredicted RBP19.13■□□□□ 0.65
CLN3-219ENST00000565778 HMOX2P30519 316 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 NR0B1P51843 470 aaKnown RBP19.13■□□□□ 0.65
CLN3-219ENST00000565778 PRKAA2P54646 552 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 ZNF630Q2M218 657 aaPredicted RBP19.13■□□□□ 0.65
CLN3-219ENST00000565778 HLA-DQA1Q5Y7H0 255 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 GPRIN3Q6ZVF9 776 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 CD163Q86VB7 1156 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 GALNT12Q8IXK2 581 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 TAGAPQ8N103 731 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 C1orf52Q8N6N3 182 aaKnown RBP19.13■□□□□ 0.65
CLN3-219ENST00000565778 LRRN4CLQ8ND94 238 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 FAM13CQ8NE31 585 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 TM4SF18Q96CE8 201 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 SPACA9Q96E40 222 aaPredicted RBP19.13■□□□□ 0.65
CLN3-219ENST00000565778 TMEM237Q96Q45 408 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 EPB41L4BQ9H329 900 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 PLSCR2Q9NRY7 297 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms