RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CCL3P10147 92 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 S1PR1P21453 382 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 CASP6P55212 293 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 HERVK_113P63132 956 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 ERVK-8P63133 956 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 FUT7Q11130 342 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 NDUFAF5Q5TEU4 345 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 CYP20A1Q6UW02 462 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 LCA5Q86VQ0 697 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 MARVELD2Q8N4S9 558 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 SLC15A4Q8N697 577 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 ZNF615Q8N8J6 731 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 ACBD4Q8NC06 268 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 PAQR8Q8TEZ7 354 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 NTNG2Q96CW9 530 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 TMEM237Q96Q45 408 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 PELOQ9BRX2 385 aaKnown RBP13.73□□□□□ -0.21
CLN3-213ENST00000565047 ERVK-6Q9BXR3 956 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 TTTY12Q9BZ98 90 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 WWTR1Q9GZV5 400 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 CXorf21Q9HAI6 301 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 COPS7AQ9UBW8 275 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 TRPS1Q9UHF7 1281 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 ERVK-19Q9WJR5 959 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 LRBAP50851 2863 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 G3V3Y1 287 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 HNRNPRO43390 633 aaKnown RBP13.72□□□□□ -0.21
CLN3-213ENST00000565047 OTCP00480 354 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 IGHG3P01860 377 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 FBXO45P0C2W1 286 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 RHOXF2BP0C7M4 288 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 ABOP16442 354 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 IMPDH1P20839 514 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 PTGS2P35354 604 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 PPIAP62937 165 aaKnown RBP13.72□□□□□ -0.21
CLN3-213ENST00000565047 CLCQ05315 142 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 MGAT2Q10469 447 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 IFT88Q13099 833 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 ZNF267Q14586 743 aaPredicted RBP13.72□□□□□ -0.21
CLN3-213ENST00000565047 LGSNQ5TDP6 509 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 OR52E8Q6IFG1 317 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 C3P1Q6ZMU1 363 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 RGS9BPQ6ZS82 235 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 COMMD6Q7Z4G1 85 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 TMEM251Q8N6I4 163 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 ACMSDQ8TDX5 336 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 RIT1Q92963 219 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 TM4SF18Q96CE8 201 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 ART5Q96L15 291 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 FAM173AQ9BQD7 235 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 RHOXF2Q9BQY4 288 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 BRF2Q9HAW0 419 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 IL1RL2Q9HB29 575 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 EMCNQ9ULC0 261 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 CHCHD2Q9Y6H1 151 aaPredicted RBP13.72□□□□□ -0.21
CLN3-213ENST00000565047 EML6Q6ZMW3 1958 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 PCNX1Q96RV3 2341 aa13.72□□□□□ -0.21
CLN3-213ENST00000565047 APCP25054 2843 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 A0A1B0GVC2 190 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 OR6C76A6NM76 312 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 C19orf84I3L1E1 186 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 PRRG2O14669 202 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 PDE9AO76083 593 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 OR4F21O95013 312 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 ESRRAP11474 423 aaPredicted RBP13.71□□□□□ -0.21
CLN3-213ENST00000565047 CHN1P15882 459 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 HTR1EP28566 365 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 SSTR4P31391 388 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 PRKAA2P54646 552 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 SGO1Q5FBB7 561 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 TCHHL1Q5QJ38 904 aaPredicted RBP13.71□□□□□ -0.21
CLN3-213ENST00000565047 ARHGAP11AQ6P4F7 1023 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 LURAP1LQ8IV03 231 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 MMP21Q8N119 569 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 EIF1ADQ8N9N8 165 aaKnown RBP13.71□□□□□ -0.21
CLN3-213ENST00000565047 CHTF18Q8WVB6 975 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 ADIPOR1Q96A54 375 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 MARVELD3Q96A59 401 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 SPACA9Q96E40 222 aaPredicted RBP13.71□□□□□ -0.21
CLN3-213ENST00000565047 L3HYPDHQ96EM0 354 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 C11orf24Q96F05 449 aaPredicted RBP13.71□□□□□ -0.21
CLN3-213ENST00000565047 ZNF681Q96N22 645 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 CNPPD1Q9BV87 410 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 DEFB127Q9H1M4 99 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 ELOVL6Q9H5J4 265 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 SACM1LQ9NTJ5 587 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 RYDENQ9NUL5 291 aaKnown RBP13.71□□□□□ -0.21
CLN3-213ENST00000565047 ZNF639Q9UID6 485 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 PCDHA9Q9Y5H5 950 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 LIPGQ9Y5X9 500 aa13.71□□□□□ -0.21
CLN3-213ENST00000565047 IQANK1A0A1B0GTG1 560 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 A0A1W2PPM1 405 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 ARHGAP10A1A4S6 786 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 FAM166BA8MTA8 275 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 FOXO6A8MYZ6 492 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 MANBAO00462 879 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 DYRK3O43781 588 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 SHBGP04278 402 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 ATP5F1P24539 256 aaPredicted RBP13.7□□□□□ -0.22
CLN3-213ENST00000565047 PIGAP37287 484 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms