RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 NINQ8N4C6 2090 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 GNG14A0A1W2PPG7 69 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 OR6C76A6NM76 312 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 A8MVJ9 347 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 KLRC4-KLRK1H3BQV0 150 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 UBFD1O14562 309 aaKnown RBP12.44□□□□□ -0.42
CLK3-216ENST00000564468 PGRMC2O15173 223 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 RGS16O15492 202 aaPredicted RBP12.44□□□□□ -0.42
CLK3-216ENST00000564468 CHEK2O96017 543 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 UROSP10746 265 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 PORP16435 677 aaPredicted RBP12.44□□□□□ -0.42
CLK3-216ENST00000564468 XKP51811 444 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 HK2P52789 917 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 MRPL49Q13405 166 aaKnown RBP12.44□□□□□ -0.42
CLK3-216ENST00000564468 ZNF267Q14586 743 aaPredicted RBP12.44□□□□□ -0.42
CLK3-216ENST00000564468 PCLAFQ15004 111 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 MPEG1Q2M385 716 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 EIF2S3LQ2VIR3 472 aaKnown RBP12.44□□□□□ -0.42
CLK3-216ENST00000564468 SPDYAQ5MJ70 313 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 ZNF324BQ6AW86 544 aaPredicted RBP12.44□□□□□ -0.42
CLK3-216ENST00000564468 SLC48A1Q6P1K1 146 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 OPN5Q6U736 354 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 RNF111Q6ZNA4 994 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 SLC29A4Q7RTT9 530 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 GALNTL5Q7Z4T8 443 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 NUBPLQ8TB37 319 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 TCP10LQ8TDR4 215 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 TM4SF18Q96CE8 201 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 METTL2AQ96IZ6 378 aaKnown RBP12.44□□□□□ -0.42
CLK3-216ENST00000564468 FAM111AQ96PZ2 611 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 TAAR6Q96RI8 345 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 SLX1AQ9BQ83 275 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 CNPPD1Q9BV87 410 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 C12orf65Q9H3J6 166 aaKnown RBP12.44□□□□□ -0.42
CLK3-216ENST00000564468 EML4Q9HC35 981 aaKnown RBP12.44□□□□□ -0.42
CLK3-216ENST00000564468 TIMMDC1Q9NPL8 285 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 HPF1Q9NWY4 346 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 SIRT5Q9NXA8 310 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 ERVK-11Q9UQG0 969 aa12.44□□□□□ -0.42
CLK3-216ENST00000564468 SPENQ96T58 3664 aaKnown RBP12.43□□□□□ -0.42
CLK3-216ENST00000564468 ASPDHA6ND91 283 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 PCDH7O60245 1069 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 PRKNO60260 465 aaPredicted RBP12.43□□□□□ -0.42
CLK3-216ENST00000564468 NME2P1O60361 137 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 NPHS1O60500 1241 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 SPAG7O75391 227 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 ERLIN1O75477 346 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 OR2J2O76002 312 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 IGKV3-11P04433 115 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 MYZAPP0CAP1 466 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 DRD2P14416 443 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 NME2P22392 152 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 SERPINB5P36952 375 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 HTR6P50406 440 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 ERVK-8P63133 956 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 HEPACAMQ14CZ8 416 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 ZNF468Q5VIY5 522 aaPredicted RBP12.43□□□□□ -0.42
CLK3-216ENST00000564468 GALNT18Q6P9A2 607 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 TRIM46Q7Z4K8 759 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 GALNT12Q8IXK2 581 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 SAMD14Q8IZD0 417 aaPredicted RBP12.43□□□□□ -0.42
CLK3-216ENST00000564468 SLC15A4Q8N697 577 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 POGLUT1Q8NBL1 392 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 FAM76AQ8TAV0 307 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 SLC22A8Q8TCC7 542 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 KCNA7Q96RP8 456 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 RASL10BQ96S79 203 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 GATA5Q9BWX5 397 aaPredicted RBP12.43□□□□□ -0.42
CLK3-216ENST00000564468 SHCBP1LQ9BZQ2 653 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 ERVK-19Q9WJR5 959 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 ZNF780BQ9Y6R6 833 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 TEP1Q99973 2627 aaKnown RBP12.43□□□□□ -0.42
CLK3-216ENST00000564468 DNAJC13O75165 2243 aa12.43□□□□□ -0.42
CLK3-216ENST00000564468 TMEM200CA6NKL6 621 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 WASHC1A8K0Z3 465 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 WWP2O00308 870 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 SLC28A1O00337 649 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 AZIN1O14977 448 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 CTIFO43310 598 aaKnown RBP12.42□□□□□ -0.42
CLK3-216ENST00000564468 ERAL1O75616 437 aaKnown RBP12.42□□□□□ -0.42
CLK3-216ENST00000564468 RSL1D1O76021 490 aaKnown RBP12.42□□□□□ -0.42
CLK3-216ENST00000564468 CPMP14384 443 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 CHN1P15882 459 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 CSNK2A2P19784 350 aaPredicted RBP12.42□□□□□ -0.42
CLK3-216ENST00000564468 NT5EP21589 574 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 ALDH3A1P30838 453 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 TIA1P31483 386 aaKnown RBP eCLIP12.42□□□□□ -0.42
CLK3-216ENST00000564468 ALDH9A1P49189 494 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 ST13P50502 369 aaKnown RBP12.42□□□□□ -0.42
CLK3-216ENST00000564468 FOXA1P55317 472 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 HMGCS1Q01581 520 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 ALDH6A1Q02252 535 aaKnown RBP12.42□□□□□ -0.42
CLK3-216ENST00000564468 BTKQ06187 659 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 RBPJQ06330 500 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 ZNF844Q08AG5 666 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 KRTCAP3Q53RY4 240 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 PIGGQ5H8A4 983 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 DND1Q8IYX4 353 aaKnown RBP12.42□□□□□ -0.42
CLK3-216ENST00000564468 ZNF321PQ8N8H1 164 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 SSC4DQ8WTU2 575 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms