RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 GALNTL5Q7Z4T8 443 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 NUBPLQ8TB37 319 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 TCP10LQ8TDR4 215 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 TM4SF18Q96CE8 201 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 METTL2AQ96IZ6 378 aaKnown RBP12.44□□□□□ -0.42
CLK3-213ENST00000563842 FAM111AQ96PZ2 611 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 TAAR6Q96RI8 345 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 SLX1AQ9BQ83 275 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 CNPPD1Q9BV87 410 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 C12orf65Q9H3J6 166 aaKnown RBP12.44□□□□□ -0.42
CLK3-213ENST00000563842 EML4Q9HC35 981 aaKnown RBP12.44□□□□□ -0.42
CLK3-213ENST00000563842 TIMMDC1Q9NPL8 285 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 HPF1Q9NWY4 346 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 SIRT5Q9NXA8 310 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 ERVK-11Q9UQG0 969 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 SPENQ96T58 3664 aaKnown RBP12.43□□□□□ -0.42
CLK3-213ENST00000563842 CLEC18AA5D8T8 446 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 ASPDHA6ND91 283 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 PCDH7O60245 1069 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 PRKNO60260 465 aaPredicted RBP12.43□□□□□ -0.42
CLK3-213ENST00000563842 NME2P1O60361 137 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 NPHS1O60500 1241 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 SPAG7O75391 227 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 ERLIN1O75477 346 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 OR2J2O76002 312 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 IGKV3-11P04433 115 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 MYZAPP0CAP1 466 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 DRD2P14416 443 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 NME2P22392 152 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 SERPINB5P36952 375 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 HTR6P50406 440 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 ERVK-8P63133 956 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 HEPACAMQ14CZ8 416 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 ZNF468Q5VIY5 522 aaPredicted RBP12.43□□□□□ -0.42
CLK3-213ENST00000563842 GALNT18Q6P9A2 607 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 CLEC18BQ6UXF7 455 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 TRIM46Q7Z4K8 759 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 GALNT12Q8IXK2 581 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 SAMD14Q8IZD0 417 aaPredicted RBP12.43□□□□□ -0.42
CLK3-213ENST00000563842 SLC15A4Q8N697 577 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 POGLUT1Q8NBL1 392 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 CLEC18CQ8NCF0 446 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 FAM76AQ8TAV0 307 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 SLC22A8Q8TCC7 542 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 KCNA7Q96RP8 456 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 RASL10BQ96S79 203 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 GATA5Q9BWX5 397 aaPredicted RBP12.43□□□□□ -0.42
CLK3-213ENST00000563842 SHCBP1LQ9BZQ2 653 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 ERVK-19Q9WJR5 959 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 ZNF780BQ9Y6R6 833 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 DNAJC13O75165 2243 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 LRRK2Q5S007 2527 aa12.43□□□□□ -0.42
CLK3-213ENST00000563842 TEX15Q9BXT5 2789 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 SPTBN1Q01082 2364 aaKnown RBP12.42□□□□□ -0.42
CLK3-213ENST00000563842 TMEM200CA6NKL6 621 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 WASHC1A8K0Z3 465 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 WWP2O00308 870 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 SLC28A1O00337 649 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 AZIN1O14977 448 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 CTIFO43310 598 aaKnown RBP12.42□□□□□ -0.42
CLK3-213ENST00000563842 ERAL1O75616 437 aaKnown RBP12.42□□□□□ -0.42
CLK3-213ENST00000563842 RSL1D1O76021 490 aaKnown RBP12.42□□□□□ -0.42
CLK3-213ENST00000563842 AGFG2O95081 481 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 CPMP14384 443 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 CHN1P15882 459 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 CSNK2A2P19784 350 aaPredicted RBP12.42□□□□□ -0.42
CLK3-213ENST00000563842 NT5EP21589 574 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 ALDH3A1P30838 453 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 TIA1P31483 386 aaKnown RBP eCLIP12.42□□□□□ -0.42
CLK3-213ENST00000563842 ALDH9A1P49189 494 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 ST13P50502 369 aaKnown RBP12.42□□□□□ -0.42
CLK3-213ENST00000563842 FOXA1P55317 472 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 HMGCS1Q01581 520 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 ALDH6A1Q02252 535 aaKnown RBP12.42□□□□□ -0.42
CLK3-213ENST00000563842 BTKQ06187 659 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 RBPJQ06330 500 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 SRSF1Q07955 248 aaKnown RBP eCLIP12.42□□□□□ -0.42
CLK3-213ENST00000563842 ZNF844Q08AG5 666 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 KRTCAP3Q53RY4 240 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 PIGGQ5H8A4 983 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 DND1Q8IYX4 353 aaKnown RBP12.42□□□□□ -0.42
CLK3-213ENST00000563842 ZNF321PQ8N8H1 164 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 KLHL29Q96CT2 875 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 APIPQ96GX9 242 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 SGCZQ96LD1 299 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 HES7Q9BYE0 225 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 CXorf21Q9HAI6 301 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 SSU72Q9NP77 194 aaKnown RBP12.42□□□□□ -0.42
CLK3-213ENST00000563842 GIMAP4Q9NUV9 329 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 SLC17A7Q9P2U7 560 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 SEC14L3Q9UDX4 400 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 CES1P1Q9UKY3 287 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 CFL2Q9Y281 166 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 WBP11Q9Y2W2 641 aaKnown RBP12.42□□□□□ -0.42
CLK3-213ENST00000563842 MYO9AB2RTY4 2548 aa12.42□□□□□ -0.42
CLK3-213ENST00000563842 RGS14O43566 566 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 ATP1B1P05026 303 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 ANXA4P09525 319 aaPredicted RBP12.41□□□□□ -0.42
CLK3-213ENST00000563842 NEFHP12036 1026 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 TDGF1P3P51864 188 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms