RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 BSGP35613 385 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 PIK3CBP42338 1070 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 ADGRD1Q6QNK2 874 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 OPN5Q6U736 354 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 RPS27LQ71UM5 84 aaKnown RBP17.51■□□□□ 0.39
VPS35-202ENST00000561713 SLC22A16Q86VW1 577 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 ZCCHC7Q8N3Z6 543 aaKnown RBP17.51■□□□□ 0.39
VPS35-202ENST00000561713 OR5L2Q8NGL0 311 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 OR10Q1Q8NGQ4 319 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 FBXL20Q96IG2 436 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 NSUN5Q96P11 429 aaKnown RBP17.51■□□□□ 0.39
VPS35-202ENST00000561713 FOXC2Q99958 501 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 FAM173AQ9BQD7 235 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 CENPKQ9BS16 269 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 CXXC4Q9H2H0 198 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 CDC42EP4Q9H3Q1 356 aaKnown RBP17.51■□□□□ 0.39
VPS35-202ENST00000561713 ACSS3Q9H6R3 686 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 IPPKQ9H8X2 491 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 SACM1LQ9NTJ5 587 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 CCM2LQ9NUG4 571 aaPredicted RBP17.51■□□□□ 0.39
VPS35-202ENST00000561713 TEX10Q9NXF1 929 aaPredicted RBP17.51■□□□□ 0.39
VPS35-202ENST00000561713 XPR1Q9UBH6 696 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 KIAA1549Q9HCM3 1950 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 A0A1W2PR48 441 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 H0YIV9 168 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 OR7A17O14581 309 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 OR10H2O60403 315 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 P04436 131 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 BUD31P41223 144 aaPredicted RBP17.5■□□□□ 0.39
VPS35-202ENST00000561713 PHEXP78562 749 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 FOXO1Q12778 655 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 ZNF267Q14586 743 aaPredicted RBP17.5■□□□□ 0.39
VPS35-202ENST00000561713 ACAP2Q15057 778 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 PCBP2Q15366 365 aaKnown RBP eCLIP17.5■□□□□ 0.39
VPS35-202ENST00000561713 LIPJQ5W064 366 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 KLC3Q6P597 504 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 PAOXQ6QHF9 649 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 LYPD8Q6UX82 237 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 TMEM64Q6YI46 380 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 TGIF2LYQ8IUE0 185 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 CLYBLQ8N0X4 340 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 FAM109AQ8N4B1 249 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 GOLM1Q8NBJ4 401 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 FAM13CQ8NE31 585 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 UHMK1Q8TAS1 419 aaKnown RBP17.5■□□□□ 0.39
VPS35-202ENST00000561713 NUBPLQ8TB37 319 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 PHF21BQ96EK2 531 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 LIME1Q9H400 295 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 NOL11Q9H8H0 719 aaKnown RBP17.5■□□□□ 0.39
VPS35-202ENST00000561713 DNAJB12Q9NXW2 375 aaKnown RBP17.5■□□□□ 0.39
VPS35-202ENST00000561713 ADGRE2Q9UHX3 823 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 ASB4Q9Y574 426 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 PCDHGA11Q9Y5H2 935 aa17.5■□□□□ 0.39
VPS35-202ENST00000561713 AKAP6Q13023 2319 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 FAM221AA4D161 298 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 CLPSP04118 112 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 KLK2P20151 261 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 CNR1P21554 472 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 ACVR2AP27037 513 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 PHBP35232 272 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 DLX5P56178 289 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 PIGGQ5H8A4 983 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 MRM1Q6IN84 353 aaKnown RBP17.49■□□□□ 0.39
VPS35-202ENST00000561713 ZNF585AQ6P3V2 769 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 CYP20A1Q6UW02 462 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 RNF111Q6ZNA4 994 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 TRILQ7L0X0 811 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 NUDT13Q86X67 352 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 ST13P4Q8IZP2 240 aaPredicted RBP17.49■□□□□ 0.39
VPS35-202ENST00000561713 MMP21Q8N119 569 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 NOA1Q8NC60 698 aaKnown RBP17.49■□□□□ 0.39
VPS35-202ENST00000561713 OR10G3Q8NGC4 313 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 WDR20Q8TBZ3 569 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 SLC22A8Q8TCC7 542 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 SPACA9Q96E40 222 aaPredicted RBP17.49■□□□□ 0.39
VPS35-202ENST00000561713 TTYH2Q9BSA4 534 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 WWTR1Q9GZV5 400 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 IL1RL2Q9HB29 575 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 LYARQ9NX58 379 aaKnown RBP17.49■□□□□ 0.39
VPS35-202ENST00000561713 MS4A12Q9NXJ0 267 aa17.49■□□□□ 0.39
VPS35-202ENST00000561713 A0A0G2JNJ9 132 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 LRRC3CA6NJW4 275 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 PROM1O43490 865 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 URI1O94763 535 aaPredicted RBP17.48■□□□□ 0.39
VPS35-202ENST00000561713 FAM58BPP0C7Q3 252 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 GLI4P10075 376 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 ENDOUP21128 410 aaKnown RBP17.48■□□□□ 0.39
VPS35-202ENST00000561713 TLX1P31314 330 aaPredicted RBP17.48■□□□□ 0.39
VPS35-202ENST00000561713 SSTR4P31391 388 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 TRAF3Q13114 568 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 EBPQ15125 230 aaKnown RBP17.48■□□□□ 0.39
VPS35-202ENST00000561713 MPEG1Q2M385 716 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 ZNF791Q3KP31 576 aaPredicted RBP17.48■□□□□ 0.39
VPS35-202ENST00000561713 NDUFAF5Q5TEU4 345 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 RTL6Q6ICC9 239 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 CCDC91Q7Z6B0 441 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 LIX1LQ8IVB5 337 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 L3MBTL4Q8NA19 623 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 CHDHQ8NE62 594 aaPredicted RBP17.48■□□□□ 0.39
VPS35-202ENST00000561713 TANKQ92844 425 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms