RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 NTRK1P04629 796 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 GPX2P18283 190 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 HTR1EP28566 365 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 GPC1P35052 558 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 POLE2P56282 527 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 ACTR3P61158 418 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 FOLH1Q04609 750 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 TRAP1Q12931 704 aaKnown RBP10.55□□□□□ -0.72
USP3-218ENST00000560202 BNIP2Q12982 314 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 MAP7Q14244 749 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 IL11RAQ14626 422 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 C1orf189Q5VU69 101 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 RHBDD2Q6NTF9 364 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 LRRC74BQ6ZQY2 392 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 PIP4P1Q86T03 277 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 PPP1R3BQ86XI6 285 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 TMEM126BQ8IUX1 230 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 ALDH16A1Q8IZ83 802 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 C10orf111Q8N326 155 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 LRRC25Q8N386 305 aaPredicted RBP10.55□□□□□ -0.72
USP3-218ENST00000560202 OR5AK3PQ8NH89 298 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 PNPT1Q8TCS8 783 aaKnown RBP10.55□□□□□ -0.72
USP3-218ENST00000560202 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.55□□□□□ -0.72
USP3-218ENST00000560202 TBC1D20Q96BZ9 403 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 ZNF184Q99676 751 aaPredicted RBP10.55□□□□□ -0.72
USP3-218ENST00000560202 DPH2Q9BQC3 489 aaPredicted RBP10.55□□□□□ -0.72
USP3-218ENST00000560202 RBCK1Q9BYM8 510 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 SLC7A5P2Q9GIP4 190 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 ZNF304Q9HCX3 659 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 ACSL6Q9UKU0 697 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 USP22Q9UPT9 525 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 MRPS33Q9Y291 106 aaKnown RBP10.55□□□□□ -0.72
USP3-218ENST00000560202 PCDHGA1Q9Y5H4 931 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 SCN3AQ9NY46 2000 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 RNF103-CHMP3A0A140T963 221 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 SMIM31A0A1B0GVY4 71 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 CLDN4O14493 209 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 B4GALT2O60909 372 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 ENTPD5O75356 428 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 SCRG1O75711 98 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 BCAS2O75934 225 aaPredicted RBP10.54□□□□□ -0.72
USP3-218ENST00000560202 TIAF1O95411 115 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 KRT75O95678 551 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 FGF5P12034 268 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 CPMP14384 443 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 PORP16435 677 aaPredicted RBP10.54□□□□□ -0.72
USP3-218ENST00000560202 GSTT1P30711 240 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 CHI3L1P36222 383 aaPredicted RBP10.54□□□□□ -0.72
USP3-218ENST00000560202 XCR1P46094 333 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 GZMMP51124 257 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 OR4D2P58180 307 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 INSM1Q01101 510 aaPredicted RBP10.54□□□□□ -0.72
USP3-218ENST00000560202 ID2Q02363 134 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 ABHD18Q0P651 414 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 DSG2Q14126 1118 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 FLOT2Q14254 428 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 ERV3-1Q14264 604 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 TRIP6Q15654 476 aaKnown RBP10.54□□□□□ -0.72
USP3-218ENST00000560202 SPDYE7PQ495Y7 208 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 PWWP2BQ6NUJ5 590 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 GPR155Q7Z3F1 870 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 CALHM3Q86XJ0 350 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 ZNF595Q8IYB9 648 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 BMPERQ8N8U9 685 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 OR2T12Q8NG77 320 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 OR9A2Q8NGT5 310 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 COL26A1Q96A83 441 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 ANKRD9Q96BM1 317 aaPredicted RBP10.54□□□□□ -0.72
USP3-218ENST00000560202 FAM120BQ96EK7 910 aaKnown RBP10.54□□□□□ -0.72
USP3-218ENST00000560202 YIPF2Q9BWQ6 316 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 EPS8L2Q9H6S3 715 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 APMAPQ9HDC9 416 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 SEMA3GQ9NS98 782 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 TOR4AQ9NXH8 423 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 EGFL7Q9UHF1 273 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 CORO2BQ9UQ03 480 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 MAP4K5Q9Y4K4 846 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 PCDHB3Q9Y5E6 796 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 ADAMTS20P59510 1910 aa10.54□□□□□ -0.72
USP3-218ENST00000560202 FAM220BPB1ANY3 271 aa10.53□□□□□ -0.72
USP3-218ENST00000560202 PROB1E7EW31 1015 aa10.53□□□□□ -0.72
USP3-218ENST00000560202 POLR1CO15160 346 aaPredicted RBP10.53□□□□□ -0.72
USP3-218ENST00000560202 CTNSO60931 367 aa10.53□□□□□ -0.72
USP3-218ENST00000560202 CDC123O75794 336 aaPredicted RBP10.53□□□□□ -0.72
USP3-218ENST00000560202 FHP07954 510 aa10.53□□□□□ -0.72
USP3-218ENST00000560202 HBQ1P09105 142 aa10.53□□□□□ -0.72
USP3-218ENST00000560202 CCL4P13236 92 aa10.53□□□□□ -0.72
USP3-218ENST00000560202 FBLP22087 321 aaKnown RBP10.53□□□□□ -0.72
USP3-218ENST00000560202 PPP2R1BP30154 601 aa10.53□□□□□ -0.72
USP3-218ENST00000560202 PTGER1P34995 402 aa10.53□□□□□ -0.72
USP3-218ENST00000560202 SOX11P35716 441 aa10.53□□□□□ -0.72
USP3-218ENST00000560202 CCT3P49368 545 aaKnown RBP10.53□□□□□ -0.72
USP3-218ENST00000560202 MVDP53602 400 aa10.53□□□□□ -0.72
USP3-218ENST00000560202 MC2RQ01718 297 aa10.53□□□□□ -0.72
USP3-218ENST00000560202 SLC13A2Q13183 592 aa10.53□□□□□ -0.72
USP3-218ENST00000560202 CCNIQ14094 377 aa10.53□□□□□ -0.72
USP3-218ENST00000560202 RGNQ15493 299 aa10.53□□□□□ -0.72
USP3-218ENST00000560202 FXNQ16595 210 aa10.53□□□□□ -0.72
USP3-218ENST00000560202 ARHGAP40Q5TG30 622 aa10.53□□□□□ -0.72
USP3-218ENST00000560202 SAXO2Q658L1 398 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms