RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 RIT1Q92963 219 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 ERP27Q96DN0 273 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 DUSP26Q9BV47 211 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 ZNF700Q9H0M5 742 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 RMND5AQ9H871 391 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 ATP13A2Q9NQ11 1180 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 NECTIN3Q9NQS3 549 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 RYDENQ9NUL5 291 aaKnown RBP8.65□□□□□ -1.02
LDLR-210ENST00000559340 FAM120CQ9NX05 1096 aaKnown RBP8.65□□□□□ -1.02
LDLR-210ENST00000559340 P4HTMQ9NXG6 502 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 SSUH2Q9Y2M2 353 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 A0A087WV48 116 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 NSG1A0A0A6YYJ2 146 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 PRSS51A0A1B0GVH4 220 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 A0A1W2PQ72 361 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 A0A1W2PRB8 838 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 MYO1GB0I1T2 1018 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 C17orf105B2RV13 164 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 NDUFAB1O14561 156 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 ABCB7O75027 752 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 ATP1B1P05026 303 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 IFI6P09912 130 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 GPC1P35052 558 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 FEN1P39748 380 aaKnown RBP8.64□□□□□ -1.03
LDLR-210ENST00000559340 NCBP2P52298 156 aaKnown RBP eCLIP8.64□□□□□ -1.03
LDLR-210ENST00000559340 UFM1P61960 85 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 ID2Q02363 134 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 MLC1Q15049 377 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 CEBPEQ15744 281 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 AGKQ53H12 422 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 TMEM198Q66K66 360 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 PAPD4Q6PIY7 484 aaKnown RBP8.64□□□□□ -1.03
LDLR-210ENST00000559340 KIRREL2Q6UWL6 708 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 RIPOR1Q6ZS17 1223 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 PPP1R32Q7Z5V6 425 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 MRGPREQ86SM8 312 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 OR4N5Q8IXE1 308 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 CCDC116Q8IYX3 515 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 KRTCAP2Q8N6L1 136 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 CCDC197Q8NCU1 140 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 TMEM52Q8NDY8 209 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 OR7G1Q8NGA0 311 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 OR7A2PQ8NGA2 310 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 M1APQ8TC57 530 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 ZNF675Q8TD23 568 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 ADAMTS17Q8TE56 1095 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 OR5P2Q8WZ92 322 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 TSLPQ969D9 159 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 MOAP1Q96BY2 351 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 CNRIP1Q96F85 164 aaPredicted RBP8.64□□□□□ -1.03
LDLR-210ENST00000559340 OR52E6Q96RD3 313 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 CLMPQ9H6B4 373 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 C3orf14Q9HBI5 128 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 COPS7AQ9UBW8 275 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 CFL2Q9Y281 166 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 MAN2B2Q9Y2E5 1009 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 RAXQ9Y2V3 346 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 HS3ST3B1Q9Y662 390 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 MRPS18BQ9Y676 258 aaKnown RBP8.64□□□□□ -1.03
LDLR-210ENST00000559340 COPG1Q9Y678 874 aaKnown RBP8.64□□□□□ -1.03
LDLR-210ENST00000559340 FRYQ5TBA9 3013 aa8.64□□□□□ -1.03
LDLR-210ENST00000559340 SPEGQ15772 3267 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 IGHV1-45A0A0A0MS14 117 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 SAGE2PA6NJ88 616 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 A8MUA0 341 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 RNASET2O00584 256 aaKnown RBP8.63□□□□□ -1.03
LDLR-210ENST00000559340 SOCS6O14544 535 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 ANKRD28O15084 1053 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 NKX2-8O15522 239 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 PRKRAO75569 313 aaKnown RBP8.63□□□□□ -1.03
LDLR-210ENST00000559340 SOX30O94993 753 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 PGRP06401 933 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 LAMP1P11279 417 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 GPX3P22352 226 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 CLCN2P51788 898 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 NME5P56597 212 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 TLE3Q04726 772 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 EEF1A2Q05639 463 aaKnown RBP8.63□□□□□ -1.03
LDLR-210ENST00000559340 VAC14Q08AM6 782 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 CDC20Q12834 499 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 MAP4K2Q12851 820 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 SF3A3Q12874 501 aaKnown RBP eCLIP8.63□□□□□ -1.031e-6■■□□□ 11.9
LDLR-210ENST00000559340 AIMP2Q13155 320 aaKnown RBP8.63□□□□□ -1.03
LDLR-210ENST00000559340 SPRED3Q2MJR0 410 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 FAM174BQ3ZCQ3 159 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 CPZQ66K79 652 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 JMJD6Q6NYC1 403 aaPredicted RBP8.63□□□□□ -1.03
LDLR-210ENST00000559340 BHLHB9Q6PI77 547 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 PAOXQ6QHF9 649 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 LANCL3Q6ZV70 420 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 GALNT12Q8IXK2 581 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 KBTBD2Q8IY47 623 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 TRIML2Q8N7C3 387 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 CLEC1AQ8NC01 280 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 B3GNT7Q8NFL0 401 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 OR11G2Q8NGC1 345 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 DNAJB8Q8NHS0 232 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 BCAS4Q8TDM0 211 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 UCN3Q969E3 161 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 VMP1Q96GC9 406 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms