RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	VASN	Q6EMK4	673 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	DGAT2L6	Q6ZPD8	337 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	SYDE1	Q6ZW31	735 aa	Predicted RBP	11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	ZC3HC1	Q86WB0	502 aa	Known RBP	11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	PRIMA1	Q86XR5	153 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	PDIK1L	Q8N165	341 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	SNX31	Q8N9S9	440 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	BBOF1	Q8ND07	529 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	DIO2	Q92813	273 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	TANK	Q92844	425 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	VPS39	Q96JC1	886 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	ZNF597	Q96LX8	424 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	GNRHR2	Q96P88	292 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	GAL3ST4	Q96RP7	486 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	MDFI	Q99750	246 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	EFCAB11	Q9BUY7	163 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	MS4A8	Q9BY19	250 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	PHACTR1	Q9C0D0	580 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	DERL2	Q9GZP9	239 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	RPF2	Q9H7B2	306 aa	Known RBP	11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	CALHM2	Q9HA72	323 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	MS4A12	Q9NXJ0	267 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	JKAMP	Q9P055	326 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	ASIC3	Q9UHC3	531 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	IKBKG	Q9Y6K9	419 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	MBD3L4	A6NDZ8	208 aa	Predicted RBP	11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	MBD3L3	A6NE82	208 aa	Predicted RBP	11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	MBD3L5	A6NJ08	208 aa	Predicted RBP	11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	OR6C76	A6NM76	312 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	TP53I11	O14683	189 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	CASK	O14936	926 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	STK16	O75716	305 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	SCEL	O95171	688 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	SNX4	O95219	450 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	HPN	P05981	417 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	ALOX15	P16050	662 aa	Predicted RBP	11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	CD22	P20273	847 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	TLX1	P31314	330 aa	Predicted RBP	11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	SSR2	P43308	183 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	HSPA7	P48741	367 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	CDK9	P50750	372 aa	Known RBP	11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	HERVK_113	P63132	956 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	ERVK-8	P63133	956 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	PLIN5	Q00G26	463 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	MGAT5	Q09328	741 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	FRG1	Q14331	258 aa	Known RBP	11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	ZNF267	Q14586	743 aa	Predicted RBP	11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	POU4F3	Q15319	338 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	TOMM20	Q15388	145 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	TBCC	Q15814	346 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	PDK4	Q16654	411 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	WHAMMP3	Q1A5X7	153 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	FBXO48	Q5FWF7	155 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	NHSL2	Q5HYW2	709 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	CDKL4	Q5MAI5	379 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	OR4C11	Q6IEV9	310 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	SULT1C3	Q6IMI6	304 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	RNF111	Q6ZNA4	994 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	PACS2	Q86VP3	889 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	GPSM1	Q86YR5	675 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	P3H2	Q8IVL5	708 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	ST13P4	Q8IZP2	240 aa	Predicted RBP	11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	TAGAP	Q8N103	731 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	DOK4	Q8TEW6	326 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	ZNF473	Q8WTR7	871 aa	Known RBP	11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	UBE2E3	Q969T4	207 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	ISL2	Q96A47	359 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	ESAM	Q96AP7	390 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	LRRC39	Q96DD0	335 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	WDYHV1	Q96HA8	205 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	WDR83	Q9BRX9	315 aa	Known RBP	11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	TMEM79	Q9BSE2	394 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	RBM24	Q9BX46	236 aa	Known RBP	11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	ERVK-6	Q9BXR3	956 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	WWTR1	Q9GZV5	400 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	CHMP2B	Q9UQN3	213 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	ERVK-19	Q9WJR5	959 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	SLC6A5	Q9Y345	797 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	PSAT1	Q9Y617	370 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	MPDZ	O75970	2070 aa		11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	HRNR	Q86YZ3	2850 aa	Predicted RBP	11.59	□□□□□ -0.55
SHMT2-223	ENST00000556689	FLNA	P21333	2647 aa	Known RBP	11.58	□□□□□ -0.55
SHMT2-223	ENST00000556689	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	SAP18	O00422	153 aa	Known RBP	11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	OR10H2	O60403	315 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	SH3BGRL	O75368	114 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	ERN1	O75460	977 aa	Known RBP	11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	TMIGD3	P0DMS9	266 aa	Predicted RBP	11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	BMP7	P18075	431 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	CASP2	P42575	452 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	SLC12A2	P55011	1212 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	SLC37A1	P57057	533 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	CHIT1	Q13231	466 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	RCAN2	Q14206	197 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	DEPDC1	Q5TB30	811 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	STEAP4	Q687X5	459 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	C18orf63	Q68DL7	685 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	GPR180	Q86V85	440 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	CXorf67	Q86X51	503 aa	Predicted RBP	11.58	□□□□□ -0.56

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