RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SIM2Q14190 667 aaPredicted RBP24.84■■□□□ 1.57
CCDC88C-205ENST00000553403 MAPK11Q15759 364 aa24.84■■□□□ 1.57
CCDC88C-205ENST00000553403 FAHD1Q6P587 224 aa24.84■■□□□ 1.57
CCDC88C-205ENST00000553403 DGLUCYQ7Z3D6 616 aa24.84■■□□□ 1.57
CCDC88C-205ENST00000553403 PIK3C3Q8NEB9 887 aa24.84■■□□□ 1.57
CCDC88C-205ENST00000553403 LRFN3Q9BTN0 628 aa24.84■■□□□ 1.57
CCDC88C-205ENST00000553403 GRIP2Q9C0E4 1043 aa24.84■■□□□ 1.57
CCDC88C-205ENST00000553403 SEMA6CQ9H3T2 930 aa24.84■■□□□ 1.57
CCDC88C-205ENST00000553403 LYRM4Q9HD34 91 aa24.84■■□□□ 1.57
CCDC88C-205ENST00000553403 DNAAF2Q9NVR5 837 aaKnown RBP24.84■■□□□ 1.57
CCDC88C-205ENST00000553403 EMC8O43402 210 aa24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 PRAMEF10O60809 474 aa24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 JRKO75564 520 aa24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 DNAJB5O75953 348 aa24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 OR12D1P0DN82 309 aa24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 ALOX12P18054 663 aa24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 CDH2P19022 906 aaPredicted RBP24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 TLX1P31314 330 aaPredicted RBP24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 PIGAP37287 484 aa24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 RPS6KA3P51812 740 aa24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 LIM2P55344 173 aa24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 RPL6Q02878 288 aaKnown RBP24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 RUNX2Q13950 521 aa24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 ZNF750Q32MQ0 723 aa24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 NADK2Q4G0N4 442 aa24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 TBC1D17Q9HA65 648 aa24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 C3orf14Q9HBI5 128 aa24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 DAPP1Q9UN19 280 aa24.83■■□□□ 1.57
CCDC88C-205ENST00000553403 PRAMEF25A6NGN4 478 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 UGT2B11O75310 529 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 MFN2O95140 757 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 C8orf89P0DMQ9 161 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 CD247P20963 164 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 FASLGP48023 281 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 PRR5P85299 388 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 KCNC4Q03721 635 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 DEFB134Q4QY38 66 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 RPS26P11Q5JNZ5 115 aaPredicted RBP24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 KLHL35Q6PF15 583 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 SLC36A4Q6YBV0 504 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 SZRD1Q7Z422 152 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 ZNF761Q86XN6 746 aaPredicted RBP24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 RASSF5Q8WWW0 418 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 ZNF607Q96SK3 696 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 ING2Q9H160 280 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 EXD2Q9NVH0 621 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 MUTYHQ9UIF7 546 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 LYVE1Q9Y5Y7 322 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 ENPP4Q9Y6X5 453 aa24.82■■□□□ 1.56
CCDC88C-205ENST00000553403 TNFRSF11BO00300 401 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 SLC28A2O43868 658 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 TNFRSF1BP20333 461 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 ALDH3B2P48448 385 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 SNRPNP63162 240 aaKnown RBP24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 LAPTM4AQ15012 233 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 GPR19Q15760 415 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 SMYD1Q8NB12 490 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 LMX1AQ8TE12 382 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 ADAMTS16Q8TE57 1224 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 SPACA7Q96KW9 195 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 TRPC4Q9UBN4 977 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 TYRP1P17643 537 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 PPP2R1BP30154 601 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 XCR1P46094 333 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 OR1E2P47887 323 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 TPD52P55327 224 aaPredicted RBP24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 MAZP56270 477 aaKnown RBP24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 GNA13Q14344 377 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 RBM48Q5RL73 367 aaKnown RBP24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 ZNF691Q5VV52 312 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 SLC44A2Q8IWA5 706 aaPredicted RBP24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 ARL14Q8N4G2 192 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 CSNK1A1LQ8N752 337 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 OR4C15Q8NGM1 316 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 ELP4Q96EB1 424 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 PIP5K1AQ99755 562 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 KIF17Q9P2E2 1029 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 DOLKQ9UPQ8 538 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 TESMINQ9Y4I5 508 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 SLC22A7Q9Y694 548 aa24.81■■□□□ 1.56
CCDC88C-205ENST00000553403 MITFO75030 526 aaPredicted RBP24.8■■□□□ 1.56
CCDC88C-205ENST00000553403 MAOBP27338 520 aa24.8■■□□□ 1.56
CCDC88C-205ENST00000553403 RYKP34925 604 aa24.8■■□□□ 1.56
CCDC88C-205ENST00000553403 TMEM107Q6UX40 140 aa24.8■■□□□ 1.56
CCDC88C-205ENST00000553403 SDR16C5Q8N3Y7 309 aa24.8■■□□□ 1.56
CCDC88C-205ENST00000553403 ATG16L2Q8NAA4 619 aa24.8■■□□□ 1.56
CCDC88C-205ENST00000553403 OR4K14Q8NGD5 310 aa24.8■■□□□ 1.56
CCDC88C-205ENST00000553403 BBS10Q8TAM1 723 aa24.8■■□□□ 1.56
CCDC88C-205ENST00000553403 GIPC3Q8TF64 312 aa24.8■■□□□ 1.56
CCDC88C-205ENST00000553403 APOBEC4Q8WW27 367 aaKnown RBP24.8■■□□□ 1.56
CCDC88C-205ENST00000553403 XAGE5Q8WWM1 108 aa24.8■■□□□ 1.56
CCDC88C-205ENST00000553403 MAGED4Q96JG8 741 aa24.8■■□□□ 1.56
CCDC88C-205ENST00000553403 BCL2L10Q9HD36 194 aa24.8■■□□□ 1.56
CCDC88C-205ENST00000553403 FAM32AQ9Y421 112 aaKnown RBP24.8■■□□□ 1.56
CCDC88C-205ENST00000553403 PRAMEF27A3QJZ7 478 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 LILRA5A6NI73 299 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 BCKDKO14874 412 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 SERPINB7O75635 380 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 UBXN7O94888 489 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 IFNW1P05000 195 aa24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms