RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 PTBP2Q9UKA9 531 aaKnown RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 PLPP1O14494 284 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 SLC30A4O14863 429 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 P04436 131 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 PORP16435 677 aaPredicted RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 ME2P23368 584 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 ATP5A1P25705 553 aaKnown RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 NOS3P29474 1203 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 SCTRP47872 440 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 HNRNPH2P55795 449 aaKnown RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 PCBP4P57723 403 aaKnown RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 CFHR1Q03591 330 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 MAD2L1Q13257 205 aaPredicted RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 RUNX2Q13950 521 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 FRG1Q14331 258 aaKnown RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 GANABQ14697 944 aaKnown RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.81□□□□□ -1.32
MSH6-209ENST00000538136 BICRALQ6AI39 1079 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 TCTN3Q6NUS6 607 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 TLDC1Q6P9B6 456 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 DHDDSQ86SQ9 333 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 RPS19BP1Q86WX3 136 aaKnown RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 RBM12BQ8IXT5 1001 aaKnown RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 OR4D9Q8NGE8 314 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 BRIX1Q8TDN6 353 aaKnown RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 DENND1AQ8TEH3 1009 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 ZC3HAV1LQ96H79 300 aaKnown RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 PRR14Q9BWN1 585 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 SLC6A16Q9GZN6 736 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 GSTO2Q9H4Y5 243 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 POLHQ9Y253 713 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 CSNK1G3Q9Y6M4 447 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 AGAP14A8MT82 685 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 SLC25A12O75746 678 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 OR2J2O76002 312 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 INMTO95050 263 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 OR6A2O95222 327 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 SDHBP21912 280 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 SLC6A2P23975 617 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 TIA1P31483 386 aaKnown RBP eCLIP6.81□□□□□ -1.32
MSH6-209ENST00000538136 GPR3P46089 330 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 IDH3AP50213 366 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 VASPP50552 380 aaPredicted RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 HNRNPFP52597 415 aaKnown RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 EFNA3P52797 238 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 PRR5P85299 388 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 BIKQ13323 160 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 AGERQ15109 404 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 EIF2S3LQ2VIR3 472 aaKnown RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 VWA5B2Q8N398 1253 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 C16orf78Q8WTQ4 265 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 TP53INP1Q96A56 240 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 TUBB6Q9BUF5 446 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 VIPAS39Q9H9C1 493 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 SEMA3GQ9NS98 782 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 GID8Q9NWU2 228 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 GPRC5BQ9NZH0 403 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 PHF11Q9UIL8 331 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 FBXL4Q9UKA2 621 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 ZNF232Q9UNY5 417 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 FRMPD3Q5JV73 1810 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 MED26O95402 600 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 CD22P20273 847 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 GDF1P27539 372 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 DNASE1L1P49184 302 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 SIRPAP78324 504 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 TLR1Q15399 786 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.8□□□□□ -1.321e-10■■■□□ 17.6
MSH6-209ENST00000538136 ZNF585AQ6P3V2 769 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 LCTLQ6UWM7 567 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 YRDCQ86U90 279 aaKnown RBP6.8□□□□□ -1.32
MSH6-209ENST00000538136 SIMC1Q8NDZ2 872 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 NUP43Q8NFH3 380 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 SLC35G5Q96KT7 338 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 ZNF578Q96N58 590 aaPredicted RBP6.8□□□□□ -1.32
MSH6-209ENST00000538136 CNTNAP3BQ96NU0 1288 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 CNTNAP3Q9BZ76 1288 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 SEMA6AQ9H2E6 1030 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 Q9N2J8 555 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 SLC35C2Q9NQQ7 365 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 KLHL28Q9NXS3 571 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 IL20RAQ9UHF4 553 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 LRIT2A6NDA9 550 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 SHISA8B8ZZ34 492 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 H3BNH8 94 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 GFYI3L273 518 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 hCG_2039718K7EN88 272 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 TOR1BO14657 336 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 DNAJA2O60884 412 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 ZIC2O95409 532 aaPredicted RBP6.8□□□□□ -1.32
MSH6-209ENST00000538136 SLC34A2O95436 690 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 PEBP1P30086 187 aaKnown RBP6.8□□□□□ -1.32
MSH6-209ENST00000538136 RGS8P57771 180 aaPredicted RBP6.8□□□□□ -1.32
MSH6-209ENST00000538136 RPS7P62081 194 aaKnown RBP6.8□□□□□ -1.32
MSH6-209ENST00000538136 CHRNEQ04844 493 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 ZNF528Q3MIS6 628 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 ANKRD34AQ69YU3 496 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 UNQ6494/PRO21346Q6UXR6 183 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 R3HCC1LQ7Z5L2 792 aaKnown RBP6.8□□□□□ -1.32
MSH6-209ENST00000538136 RHEBL1Q8TAI7 183 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms