RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TRPC4Q9UBN4 977 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 REV1Q9UBZ9 1251 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 MGAT4BQ9UQ53 548 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 RWDD3Q9Y3V2 267 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 PPM1DO15297 605 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 LATO43561 262 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 ENTPD6O75354 484 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 UPK1BO75841 260 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 IGFBP1P08833 259 aaPredicted RBP12.46□□□□□ -0.41
LDLR-203ENST00000535915 ACP5P13686 325 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 DRD3P35462 400 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 WASP42768 502 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 SSR2P43308 183 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 UGT2B15P54855 530 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 CSNK1G2P78368 415 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 TSTQ16762 297 aaKnown RBP12.46□□□□□ -0.41
LDLR-203ENST00000535915 INAVAQ3KP66 663 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 TPRG1LQ5T0D9 272 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 FAM92BQ6ZTR7 304 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 UBE3DQ7Z6J8 389 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 OR4D11Q8NGI4 311 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 RASSF5Q8WWW0 418 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 FGF13Q92913 245 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 SLC35G5Q96KT7 338 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 Q96MT0 163 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 WFDC6Q9BQY6 131 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 DPH7Q9BTV6 452 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 CDADC1Q9BWV3 514 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 OR51I1Q9H343 314 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 SERHL2Q9H4I8 314 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 NT5DC2Q9H857 520 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 MBNL1Q9NR56 388 aaKnown RBP12.46□□□□□ -0.41
LDLR-203ENST00000535915 P2RX2Q9UBL9 471 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 ZNF229Q9UJW7 825 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 KLK4Q9Y5K2 254 aa12.46□□□□□ -0.41
LDLR-203ENST00000535915 DNMT3AQ9Y6K1 912 aaPredicted RBP12.46□□□□□ -0.41
LDLR-203ENST00000535915 TAF4O00268 1085 aa12.46□□□□□ -0.42
LDLR-203ENST00000535915 FAAHO00519 579 aa12.46□□□□□ -0.42
LDLR-203ENST00000535915 MID1O15344 667 aa12.46□□□□□ -0.42
LDLR-203ENST00000535915 STATHP02808 62 aa12.46□□□□□ -0.42
LDLR-203ENST00000535915 MYOGP15173 224 aa12.46□□□□□ -0.42
LDLR-203ENST00000535915 PDGFRLQ15198 375 aa12.46□□□□□ -0.42
LDLR-203ENST00000535915 ADGRD2Q7Z7M1 963 aa12.46□□□□□ -0.42
LDLR-203ENST00000535915 CADM3Q8N126 398 aa12.46□□□□□ -0.42
LDLR-203ENST00000535915 CLIP4Q8N3C7 705 aa12.46□□□□□ -0.42
LDLR-203ENST00000535915 TEFMQ96QE5 360 aaKnown RBP12.46□□□□□ -0.42
LDLR-203ENST00000535915 PITHD1Q9GZP4 211 aaPredicted RBP12.46□□□□□ -0.42
LDLR-203ENST00000535915 XKR8Q9H6D3 395 aa12.46□□□□□ -0.42
LDLR-203ENST00000535915 TRPV5Q9NQA5 729 aa12.46□□□□□ -0.42
LDLR-203ENST00000535915 ACSS1Q9NUB1 689 aaPredicted RBP12.46□□□□□ -0.42
LDLR-203ENST00000535915 IMP3Q9NV31 184 aaKnown RBP12.46□□□□□ -0.42
LDLR-203ENST00000535915 SCHIP1Q9P0W5 487 aaPredicted RBP12.46□□□□□ -0.42
LDLR-203ENST00000535915 PRKAG2Q9UGJ0 569 aa12.46□□□□□ -0.42
LDLR-203ENST00000535915 COL4A3Q01955 1670 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.45□□□□□ -0.42
LDLR-203ENST00000535915 TBX1O43435 398 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 NR2F1P10589 423 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 GSTM5P46439 218 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 XKP51811 444 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 TAS2R38P59533 333 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 RPS3AP61247 264 aaKnown RBP12.45□□□□□ -0.42
LDLR-203ENST00000535915 TARDBPQ13148 414 aaKnown RBP eCLIP12.45□□□□□ -0.42
LDLR-203ENST00000535915 ILKQ13418 452 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 NDUFAF5Q5TEU4 345 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 TUBA3EQ6PEY2 450 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 CASP12Q6UXS9 341 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 LACC1Q8IV20 430 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 INSM2Q96T92 566 aaPredicted RBP12.45□□□□□ -0.42
LDLR-203ENST00000535915 POLR2J3Q9H1A7 115 aaKnown RBP12.45□□□□□ -0.42
LDLR-203ENST00000535915 GLIPR2Q9H4G4 154 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 WDR26Q9H7D7 661 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 DDX31Q9H8H2 851 aaKnown RBP12.45□□□□□ -0.42
LDLR-203ENST00000535915 ZCCHC3Q9NUD5 404 aaKnown RBP12.45□□□□□ -0.42
LDLR-203ENST00000535915 DNAJC27Q9NZQ0 273 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 CCDC59Q9P031 241 aaKnown RBP12.45□□□□□ -0.42
LDLR-203ENST00000535915 ADAM29Q9UKF5 820 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 ACSL5Q9ULC5 683 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 A3GALT2U3KPV4 340 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 PRAMEF27A3QJZ7 478 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 GLOD5A6NK44 160 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 WASHC1A8K0Z3 465 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 CCRL2O00421 344 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 UGT2B17O75795 530 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 POU2F2P09086 479 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 OPRD1P41143 372 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 PIN1Q13526 163 aaPredicted RBP12.45□□□□□ -0.42
LDLR-203ENST00000535915 MLF2Q15773 248 aaPredicted RBP12.45□□□□□ -0.42
LDLR-203ENST00000535915 WASH2PQ6VEQ5 465 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 GET4Q7L5D6 327 aaPredicted RBP12.45□□□□□ -0.42
LDLR-203ENST00000535915 LYSMD2Q8IV50 215 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 KLK6Q92876 244 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 OTUB1Q96FW1 271 aaPredicted RBP12.45□□□□□ -0.42
LDLR-203ENST00000535915 TEX101Q9BY14 249 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 NXF2Q9GZY0 626 aaKnown RBP12.45□□□□□ -0.42
LDLR-203ENST00000535915 KCNK12Q9HB15 430 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 THAP10Q9P2Z0 257 aaPredicted RBP12.45□□□□□ -0.42
LDLR-203ENST00000535915 HCN2Q9UL51 889 aa12.45□□□□□ -0.42
LDLR-203ENST00000535915 A0A0A6YYD5 115 aa12.44□□□□□ -0.42
LDLR-203ENST00000535915 SAGE2PA6NJ88 616 aa12.44□□□□□ -0.42
LDLR-203ENST00000535915 C5orf67F2Z3F1 127 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms