RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 OR12D2P58182 307 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 VSX2P58304 361 aaPredicted RBP11.16□□□□□ -0.62
SYNPO-204ENST00000519664 EMX1Q04741 257 aaPredicted RBP11.16□□□□□ -0.62
SYNPO-204ENST00000519664 KCNJ8Q15842 424 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 CCSMST1Q4G0I0 132 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 NDUFAF5Q5TEU4 345 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 MLIPQ5VWP3 458 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 RPTNQ6XPR3 784 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 CAMKVQ8NCB2 501 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 OTUB2Q96DC9 234 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 RETREG1Q9H6L5 497 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 ISPDA4D126 451 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 ELOA3DA6NLF2 546 aaPredicted RBP11.16□□□□□ -0.62
SYNPO-204ENST00000519664 HSD3B1P14060 373 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 HSD3B2P26439 372 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 AOAHP28039 575 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 BMP8BP34820 402 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 GNALP38405 381 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 VEGFBP49765 207 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 HBA1P69905 142 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 RBBP4Q09028 425 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 SLC5A12Q1EHB4 618 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 ELOA3BQ3SY89 546 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 PARS2Q7L3T8 475 aaKnown RBP11.16□□□□□ -0.62
SYNPO-204ENST00000519664 BMP8AQ7Z5Y6 402 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 SLC30A8Q8IWU4 369 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 KLHDC8AQ8IYD2 350 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 PELI3Q8N2H9 469 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 CBARPQ8N350 705 aaPredicted RBP11.16□□□□□ -0.62
SYNPO-204ENST00000519664 METTL25Q8N6Q8 603 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 MFSD2AQ8NA29 543 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 ELOA3Q8NG57 546 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 OR10H5Q8NGA6 315 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 OR8K3Q8NH51 312 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 MOSPD2Q8NHP6 518 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 ISL2Q96A47 359 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 MAELQ96JY0 434 aaKnown RBP11.16□□□□□ -0.62
SYNPO-204ENST00000519664 TMEM246Q9BRR3 403 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 MMP27Q9H306 513 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 POLE3Q9NRF9 147 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 BAIAP2Q9UQB8 552 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 CCDC85CA6NKD9 419 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 HOXC13P31276 330 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 ACSL1P33121 698 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 VLDLRP98155 873 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 TRAM2Q15035 370 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 LEXMQ3ZCV2 418 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 ANKRD34AQ69YU3 496 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 HMBOX1Q6NT76 420 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 CCBE1Q6UXH8 406 aaPredicted RBP11.16□□□□□ -0.62
SYNPO-204ENST00000519664 RASGEF1AQ8N9B8 481 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 CHDHQ8NE62 594 aaPredicted RBP11.16□□□□□ -0.62
SYNPO-204ENST00000519664 OR4K14Q8NGD5 310 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 OR51L1Q8NGJ5 315 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 C1orf216Q8TAB5 229 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 TRIB3Q96RU7 358 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 GINS4Q9BRT9 223 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 TTYH2Q9BSA4 534 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 OR8D2Q9GZM6 311 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 SLC6A16Q9GZN6 736 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 MKKSQ9NPJ1 570 aaPredicted RBP11.16□□□□□ -0.62
SYNPO-204ENST00000519664 SACM1LQ9NTJ5 587 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 ZSCAN32Q9NX65 697 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 J3KTA2 159 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 ORC5O43913 435 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 HLA-DPB1P04440 258 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 CSN2P05814 226 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 TIMP2P16035 220 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 SELENOWP63302 87 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 LIN54Q6MZP7 749 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 TBPL2Q6SJ96 375 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 ZNF676Q8N7Q3 588 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 OR56A1Q8NGH5 318 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 OR52N2Q8NGI0 321 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 TNFAIP8L1Q8WVP5 186 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 LRIG1Q96JA1 1093 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 DPYSL5Q9BPU6 564 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 OR51E2Q9H255 320 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 TCF7L1Q9HCS4 588 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 NECTIN3Q9NQS3 549 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 ACSL5Q9ULC5 683 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 HEBP2Q9Y5Z4 205 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 PHIPQ8WWQ0 1821 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 SMAD9O15198 467 aaKnown RBP11.15□□□□□ -0.62
SYNPO-204ENST00000519664 PROM1O43490 865 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 HOXD8P13378 290 aaPredicted RBP11.15□□□□□ -0.62
SYNPO-204ENST00000519664 RHCEP18577 417 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 CRHBPP24387 322 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 GABRA3P34903 492 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 GRIA2P42262 883 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 ENPP2Q13822 863 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 ITPRIPL2Q3MIP1 535 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 EIPR1Q53HC9 387 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 MANEALQ5VSG8 457 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 OR8J1Q8NGP2 316 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 LILRB4Q8NHJ6 448 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 PHOSPHO1Q8TCT1 267 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 ZFP90Q8TF47 636 aa11.15□□□□□ -0.62
SYNPO-204ENST00000519664 ZNF486Q96H40 463 aaPredicted RBP11.15□□□□□ -0.62
SYNPO-204ENST00000519664 TMEM121BQ9BXQ6 578 aaPredicted RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms