RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 C9orf40Q8IXQ3 194 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 ESAMQ96AP7 390 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 GPATCH1Q9BRR8 931 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 ERVK-6Q9BXR3 956 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 ACTR8Q9H981 624 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 CAB39LQ9H9S4 337 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 ERVK-19Q9WJR5 959 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 C2orf92A0A1B0GVN3 265 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 A6NNC1 897 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 RTCAO00442 366 aaKnown RBP19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 UGDHO60701 494 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 TRAPPC6AO75865 159 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 GPR75O95800 540 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 EPPINO95925 133 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 CELA3AP09093 270 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 NR2F6P10588 404 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 ADH7P40394 386 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 E2F2Q14209 437 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 SLMAPQ14BN4 828 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 RPS6KA2Q15349 733 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 TOMM20Q15388 145 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 OR4D1Q15615 310 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 NTRK2Q16620 822 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 KLC3Q6P597 504 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 SPATA6LQ8N4H0 392 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 TP53INP1Q96A56 240 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 WWTR1Q9GZV5 400 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 ALG9Q9H6U8 611 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 TSC22D4Q9Y3Q8 395 aa19.35■□□□□ 0.69
SQSTM1-210ENST00000506042 ARHGAP21Q5T5U3 1957 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 TUBAL3A6NHL2 446 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 KERAO60938 352 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 TBX6O95947 436 aaPredicted RBP19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 C1QAP02745 245 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 DRD2P14416 443 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 CD22P20273 847 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 PIK3R1P27986 724 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 OPRM1P35372 400 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 PCDH1Q08174 1060 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 CBLBQ13191 982 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 KEAP1Q14145 624 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 FASTKD3Q14CZ7 662 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 FBXL19-AS1Q494R0 122 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 FBXO48Q5FWF7 155 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 ADNP2Q6IQ32 1131 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 NUDT13Q86X67 352 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 OR4N5Q8IXE1 308 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 HUS1BQ8NHY5 278 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 UBTD2Q8WUN7 234 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 POM121Q96HA1 1249 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 UBXN10Q96LJ8 280 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 WDR83Q9BRX9 315 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 SLC6A15Q9H2J7 730 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 OR51B5Q9H339 312 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 SAYSD1Q9NPB0 183 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 CRIM1Q9NZV1 1036 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 SPRR3Q9UBC9 169 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 CFL2Q9Y281 166 aa19.34■□□□□ 0.69
SQSTM1-210ENST00000506042 SAP18O00422 153 aaKnown RBP19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 GUCY1B2O75343 617 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 SH3BGRLO75368 114 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 RAF1P04049 648 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 LTA4HP09960 611 aaKnown RBP19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 STX2P32856 288 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 ARL1P40616 181 aaPredicted RBP19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 TRPC1P48995 793 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 DLX5P56178 289 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 CAV1Q03135 178 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 DUSP8Q13202 625 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 NAB1Q13506 487 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 SETDB1Q15047 1291 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 ZKSCAN8Q15776 578 aaPredicted RBP19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 FAM83EQ2M2I3 478 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 OR52E8Q6IFG1 317 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 C3orf62Q6ZUJ4 267 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 UBE3DQ7Z6J8 389 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 OR10G3Q8NGC4 313 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 PPWD1Q96BP3 646 aaKnown RBP19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 NAPGQ99747 312 aaPredicted RBP19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 MCMBPQ9BTE3 642 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 ACBD3Q9H3P7 528 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 SH2D2AQ9NP31 389 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 SEMA4BQ9NPR2 832 aaPredicted RBP19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 AHSPQ9NZD4 102 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 WHRNQ9P202 907 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 TNPO3Q9Y5L0 923 aaKnown RBP19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 CHCHD2Q9Y6H1 151 aaPredicted RBP19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 IKBKGQ9Y6K9 419 aa19.33■□□□□ 0.68
SQSTM1-210ENST00000506042 WISP3O95389 354 aaPredicted RBP19.32■□□□□ 0.68
SQSTM1-210ENST00000506042 SLC35E2BP0CK96 405 aa19.32■□□□□ 0.68
SQSTM1-210ENST00000506042 SLC35E2P0CK97 266 aa19.32■□□□□ 0.68
SQSTM1-210ENST00000506042 GFAPP14136 432 aa19.32■□□□□ 0.68
SQSTM1-210ENST00000506042 SSTR1P30872 391 aa19.32■□□□□ 0.68
SQSTM1-210ENST00000506042 EEF1A1P68104 462 aaKnown RBP19.32■□□□□ 0.68
SQSTM1-210ENST00000506042 SORDQ00796 357 aa19.32■□□□□ 0.68
SQSTM1-210ENST00000506042 CUL3Q13618 768 aa19.32■□□□□ 0.68
SQSTM1-210ENST00000506042 EBPQ15125 230 aaKnown RBP19.32■□□□□ 0.68
SQSTM1-210ENST00000506042 ACSF3Q4G176 576 aaPredicted RBP19.32■□□□□ 0.68
SQSTM1-210ENST00000506042 C10orf62Q5T681 223 aaPredicted RBP19.32■□□□□ 0.68
SQSTM1-210ENST00000506042 EEF1A1P5Q5VTE0 462 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms