RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 OR6N2Q8NGY6 317 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 FNDC8Q8TC99 324 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 TRIB2Q92519 343 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 NAA11Q9BSU3 229 aaPredicted RBP18.31■□□□□ 0.52
COL27A1-207ENST00000494090 NUDT15Q9NV35 164 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 RNF186Q9NXI6 227 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 PPP4R1LQ9P1A2 415 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 TMPRSS11EQ9UL52 423 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 SCML1Q9UN30 329 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 FXYD6-FXYD2A0A087WZ82 144 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 SMIM30A4D0T7 59 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 LAMTOR5O43504 91 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 DPH2Q9BQC3 489 aaPredicted RBP18.31■□□□□ 0.52
COL27A1-207ENST00000494090 FXYD6Q9H0Q3 95 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 XKR8Q9H6D3 395 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 A0A1W2PPL8 197 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 SOBPA7XYQ1 873 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 INMT-MINDY4F8WBC2 141 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 OR7A10O76100 309 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 ERVPABLB-1P60509 514 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 ID2Q02363 134 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 NXPE4Q6UWF7 544 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 CSNK1A1LQ8N752 337 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 GPR150Q8NGU9 434 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 NEIL3Q8TAT5 605 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 EBF1Q9UH73 591 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 ADAMTS5Q9UNA0 930 aa18.31■□□□□ 0.52
COL27A1-207ENST00000494090 ZNF217O75362 1048 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 CSF2RAP15509 400 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 NTSR1P30989 418 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 DPP6P42658 865 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 MLLT10P55197 1068 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 ZER1Q7Z7L7 766 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 ZNF296Q8WUU4 475 aaPredicted RBP18.3■□□□□ 0.52
COL27A1-207ENST00000494090 RFT1Q96AA3 541 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 IL21RQ9HBE5 538 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 EXTL2Q9UBQ6 330 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 SCN11AQ9UI33 1791 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 UNC119BA6NIH7 251 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 UGT2B10P36537 528 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 SLAMF1Q13291 335 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 XKRXQ6PP77 449 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 ALDH16A1Q8IZ83 802 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 SDR39U1Q9NRG7 319 aaPredicted RBP18.3■□□□□ 0.52
COL27A1-207ENST00000494090 NCDNQ9UBB6 729 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 APOBEC3BQ9UH17 382 aaKnown RBP18.3■□□□□ 0.52
COL27A1-207ENST00000494090 SLC7A11Q9UPY5 501 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 PIGBOS1A0A0B4J2F0 54 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 JUNDP17535 347 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 SPRED3Q2MJR0 410 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 C6orf120Q7Z4R8 191 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 DEFB119Q8N690 84 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 SPATA6Q9NWH7 488 aaPredicted RBP18.3■□□□□ 0.52
COL27A1-207ENST00000494090 MYH11P35749 1972 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 HBQ1P09105 142 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 ATF4P18848 351 aaPredicted RBP18.3■□□□□ 0.52
COL27A1-207ENST00000494090 SOX9P48436 509 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 HNRNPKP61978 463 aaKnown RBP eCLIP18.3■□□□□ 0.523e-7■■■■□ 23.6
COL27A1-207ENST00000494090 RUNX3Q13761 415 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 RAB33AQ14088 237 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 FUNDC2Q9BWH2 189 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 ANKRD60Q9BZ19 345 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 IRF2BPLQ9H1B7 796 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 NOP16Q9Y3C1 178 aaKnown RBP18.3■□□□□ 0.52
COL27A1-207ENST00000494090 M0QZQ0 153 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 BPIP17213 487 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 ZNF33BQ06732 778 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 CDK10Q15131 360 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 PLEKHN1Q494U1 663 aaPredicted RBP18.3■□□□□ 0.52
COL27A1-207ENST00000494090 MANEALQ5VSG8 457 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 GTF2IRD2BQ6EKJ0 949 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 GTF2IRD2Q86UP8 949 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 TSPYL5Q86VY4 417 aaPredicted RBP18.3■□□□□ 0.52
COL27A1-207ENST00000494090 HUS1BQ8NHY5 278 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 HSPA12BQ96MM6 686 aa18.3■□□□□ 0.52
COL27A1-207ENST00000494090 ERCC1P07992 297 aaPredicted RBP18.29■□□□□ 0.52
COL27A1-207ENST00000494090 STSP08842 583 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 CCNOP22674 350 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 MAGEA2P43356 314 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 UGT3A2Q3SY77 523 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 CCSAPQ6IQ19 270 aaPredicted RBP18.29■□□□□ 0.52
COL27A1-207ENST00000494090 PLXDC1Q8IUK5 500 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 SORT1Q99523 831 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 GPR174Q9BXC1 333 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 MYH10P35580 1976 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.29■□□□□ 0.52
COL27A1-207ENST00000494090 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.29■□□□□ 0.52
COL27A1-207ENST00000494090 CSF2P04141 144 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 H2BFMP0C1H6 154 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 TFPTP0C1Z6 253 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 SRCP12931 536 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 STT3AP46977 705 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 ELOAQ14241 798 aaKnown RBP18.29■□□□□ 0.52
COL27A1-207ENST00000494090 SPHARQ15513 63 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 LRRC69Q6ZNQ3 347 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 TMPPEQ6ZT21 453 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 TMIEQ8NEW7 156 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 AKAP1Q92667 903 aaKnown RBP eCLIP18.29■□□□□ 0.52
COL27A1-207ENST00000494090 GSTO2Q9H4Y5 243 aa18.29■□□□□ 0.52
COL27A1-207ENST00000494090 H3BUI4 141 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms