RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 PRSS58Q8IYP2 241 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 OR2L5Q8NG80 312 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 OR51Q1Q8NH59 317 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 MS4A6EQ96DS6 147 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 KCNC2Q96PR1 638 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 ZBTB18Q99592 522 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 TBCDQ9BTW9 1192 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 MFRPQ9BY79 579 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 ROGDIQ9GZN7 287 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 ZNF160Q9HCG1 818 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 CCDC167Q9P0B6 97 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 WBP11Q9Y2W2 641 aaKnown RBP15.97■□□□□ 0.15
VIM-205ENST00000485947 TNRC6AQ8NDV7 1962 aaKnown RBP15.96■□□□□ 0.15
VIM-205ENST00000485947 GNG14A0A1W2PPG7 69 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 CDK2AP1O14519 115 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 SNRPB2P08579 225 aaKnown RBP15.96■□□□□ 0.15
VIM-205ENST00000485947 GP1BBP13224 206 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 ALOX12P18054 663 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 BSGP35613 385 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 KCNK10P57789 538 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 UFM1P61960 85 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 TRA2BP62995 288 aaKnown RBP15.96■□□□□ 0.15
VIM-205ENST00000485947 Q0VFX4 171 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 STX5Q13190 355 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 DPY19L1Q2PZI1 675 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 OR4C11Q6IEV9 310 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 GK5Q6ZS86 529 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 IKBIPQ70UQ0 350 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 SNX32Q86XE0 403 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 FUNDC1Q8IVP5 155 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 KCT2Q8NC54 265 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 PLPP5Q8NEB5 264 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 BARD1Q99728 777 aaKnown RBP15.96■□□□□ 0.15
VIM-205ENST00000485947 ZNF717Q9BY31 904 aaPredicted RBP15.96■□□□□ 0.15
VIM-205ENST00000485947 VN1R1Q9GZP7 353 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 DDX31Q9H8H2 851 aaKnown RBP15.96■□□□□ 0.15
VIM-205ENST00000485947 MYNNQ9NPC7 610 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 MRPS2Q9Y399 296 aaKnown RBP15.96■□□□□ 0.15
VIM-205ENST00000485947 PCDHGA10Q9Y5H3 936 aa15.96■□□□□ 0.15
VIM-205ENST00000485947 A0A088AWK7 358 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 ARHGAP10A1A4S6 786 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 SAP18O00422 153 aaKnown RBP15.95■□□□□ 0.14
VIM-205ENST00000485947 ERI3O43414 337 aaKnown RBP15.95■□□□□ 0.14
VIM-205ENST00000485947 GALR3O60755 368 aaPredicted RBP15.95■□□□□ 0.14
VIM-205ENST00000485947 KLHL18O94889 574 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 SCELO95171 688 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 IL1RNP18510 177 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 PRPS1L1P21108 318 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 ZNF10P21506 573 aaPredicted RBP15.95■□□□□ 0.14
VIM-205ENST00000485947 RPL3P39023 403 aaKnown RBP15.95■□□□□ 0.14
VIM-205ENST00000485947 SSR2P43308 183 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 XCR1P46094 333 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 POLR2JP52435 117 aaKnown RBP15.95■□□□□ 0.14
VIM-205ENST00000485947 RCAN2Q14206 197 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 PTGR1Q14914 329 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 COQ5Q5HYK3 327 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 RPUSD3Q6P087 351 aaKnown RBP15.95■□□□□ 0.14
VIM-205ENST00000485947 ABHD17CQ6PCB6 329 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 BLOC1S3Q6QNY0 202 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 UBE3DQ7Z6J8 389 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 OR9I1Q8NGQ6 314 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 DNAJB14Q8TBM8 379 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 TESCQ96BS2 214 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 C8orf44Q96CB5 159 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 IMMP1LQ96LU5 166 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 TSSK3Q96PN8 268 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 EBPLQ9BY08 206 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 AICDAQ9GZX7 198 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 RNF32Q9H0A6 362 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 AGPAT4Q9NRZ5 378 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 TEKT2Q9UIF3 430 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 NAALAD2Q9Y3Q0 740 aa15.95■□□□□ 0.14
VIM-205ENST00000485947 SPTBN1Q01082 2364 aaKnown RBP15.95■□□□□ 0.14
VIM-205ENST00000485947 LOC100653049A0A140TA62 436 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 KRT34O76011 436 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 KLK1P06870 262 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 TACR1P25103 407 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 TPP2P29144 1249 aaPredicted RBP15.94■□□□□ 0.14
VIM-205ENST00000485947 SOX11P35716 441 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 ZFP36L2P47974 494 aaKnown RBP15.94■□□□□ 0.14
VIM-205ENST00000485947 NME5P56597 212 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 MAT1AQ00266 395 aaKnown RBP15.94■□□□□ 0.14
VIM-205ENST00000485947 PCOLCEQ15113 449 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 EXT1Q16394 746 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 SYT16Q17RD7 645 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 CCNYL2Q5T2Q4 361 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 PLAG1Q6DJT9 500 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 CPEB2Q7Z5Q1 589 aaKnown RBP15.94■□□□□ 0.14
VIM-205ENST00000485947 RIMKLAQ8IXN7 391 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 ZCCHC7Q8N3Z6 543 aaKnown RBP15.94■□□□□ 0.14
VIM-205ENST00000485947 POU5F2Q8N7G0 328 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 PSMF1Q92530 271 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 HAS2Q92819 552 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 SNRNP40Q96DI7 357 aaKnown RBP15.94■□□□□ 0.14
VIM-205ENST00000485947 MTERF3Q96E29 417 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 SPDL1Q96EA4 605 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 TEX37Q96LM6 180 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 C1orf21Q9H246 121 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 KLHL31Q9H511 634 aa15.94■□□□□ 0.14
VIM-205ENST00000485947 COPS7BQ9H9Q2 264 aaPredicted RBP15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms