RNA–Protein interactions for RNA: ENST00000468872.5

LSM5-209, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM5, Length 636 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM5-209	ENST00000468872	RPL27	P61353	136 aa	Known RBP	4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	FASTKD3	Q14CZ7	662 aa	Known RBP	4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	UPP1	Q16831	310 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	KNOP1	Q1ED39	458 aa	Known RBP	4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	FASTKD1	Q53R41	847 aa	Known RBP	4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	TAF1B	Q53T94	588 aa	Predicted RBP	4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	TOR1AIP1	Q5JTV8	583 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	TEX35	Q5T0J7	233 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	ZC2HC1B	Q5TFG8	222 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	RTL6	Q6ICC9	239 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	CDC42EP5	Q6NZY7	148 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	ZCCHC12	Q6PEW1	402 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872		Q6ZRG5	221 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	TAF8	Q7Z7C8	310 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	ADGRD2	Q7Z7M1	963 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	KCNMB4	Q86W47	210 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	ZFAND4	Q86XD8	727 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	KDM8	Q8N371	416 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	METTL4	Q8N3J2	472 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	OR6F1	Q8NGZ6	308 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	GOLGA5	Q8TBA6	731 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	P3H4	Q92791	437 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	NSMCE2	Q96MF7	247 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	PRICKLE1	Q96MT3	831 aa	Predicted RBP	4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	FAM111A	Q96PZ2	611 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	ALKBH3	Q96Q83	286 aa	Predicted RBP	4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	COQ7	Q99807	217 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	UPF3A	Q9H1J1	476 aa	Known RBP	4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	GDF3	Q9NR23	364 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	ZDHHC18	Q9NUE0	388 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	FGD5	Q6ZNL6	1462 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	DNMBP	Q6XZF7	1577 aa		4.22	□□□□□ -1.73
LSM5-209	ENST00000468872	FHOD3	Q2V2M9	1422 aa		4.21	□□□□□ -1.73
LSM5-209	ENST00000468872	CD109	Q6YHK3	1445 aa		4.21	□□□□□ -1.73
LSM5-209	ENST00000468872	POGZ	Q7Z3K3	1410 aa		4.21	□□□□□ -1.73
LSM5-209	ENST00000468872	KPNA7	A9QM74	516 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	CHEK1	O14757	476 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	TFEC	O14948	347 aa	Predicted RBP	4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	ZNF749	O43361	778 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	SNAP91	O60641	907 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	SYNGR4	O95473	234 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	MT-ATP6	P00846	226 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	TGFA	P01135	160 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	FH	P07954	510 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	KRT5	P13647	590 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	CD1D	P15813	335 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	AKT2	P31751	481 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	CD86	P42081	329 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	ALDH3B1	P43353	468 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	IRX1	P78414	480 aa	Predicted RBP	4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	NFATC2	Q13469	925 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	SLC17A1	Q14916	467 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	CCDC40	Q4G0X9	1142 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	CMPK2	Q5EBM0	449 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	LIPJ	Q5W064	366 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	TRIM65	Q6PJ69	517 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	BNIPL	Q7Z465	357 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	LRRTM1	Q86UE6	522 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	MYPOP	Q86VE0	399 aa	Predicted RBP	4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	CARM1	Q86X55	608 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	RELL2	Q8NC24	303 aa	Predicted RBP	4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	LEMD2	Q8NC56	503 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	PRSS33	Q8NF86	280 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	TCP11	Q8WWU5	503 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	GTF3A	Q92664	365 aa	Known RBP	4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	MRPL38	Q96DV4	380 aa	Known RBP	4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	C16orf58	Q96GQ5	468 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	LGMN	Q99538	433 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	SYT11	Q9BT88	431 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	RNF215	Q9Y6U7	377 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	KIF7	Q2M1P5	1343 aa		4.21	□□□□□ -1.74
LSM5-209	ENST00000468872	IGHV4-30-2	A0A087WSY4	118 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	LOC390937	A0A1W2PQ73	354 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	ZNF724	A8MTY0	619 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	TRAFD1	O14545	582 aa	Predicted RBP	4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	IDH3B	O43837	385 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	UGT1A4	P22310	534 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	RPA1	P27694	616 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	ID1	P41134	155 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	PEX3	P56589	373 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	SST	P61278	116 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	RPS27A	P62979	156 aa	Known RBP	4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	LY6D	Q14210	128 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	P2RY14	Q15391	338 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	TRADD	Q15628	312 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	C1orf189	Q5VU69	101 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	HIST2H2AA3	Q6FI13	130 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	KRTAP5-1	Q6L8H4	278 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	ISLR2	Q6UXK2	745 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	MCM10	Q7L590	875 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	SLC22A16	Q86VW1	577 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	TBC1D10C	Q8IV04	446 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	GVQW1	Q8N7I0	195 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872		Q8NBF4	154 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	CNNM3	Q8NE01	707 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	SSC4D	Q8WTU2	575 aa		4.2	□□□□□ -1.74
LSM5-209	ENST00000468872	PNPLA2	Q96AD5	504 aa		4.2	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms