RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 IL20RAQ9UHF4 553 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 MBD1Q9UIS9 605 aaPredicted RBP11.07□□□□□ -0.64
NPHP4-204ENST00000460696 SNX7Q9UNH6 387 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 MAN2B2Q9Y2E5 1009 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 FABP12A6NFH5 140 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 FAM227AF5H4B4 570 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 JRKO75564 520 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 DCNP07585 359 aaKnown RBP11.06□□□□□ -0.64
NPHP4-204ENST00000460696 IL9P15248 144 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 RAB28P51157 221 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 SRP54P61011 504 aaKnown RBP11.06□□□□□ -0.64
NPHP4-204ENST00000460696 ISL1P61371 349 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 PTGES3Q15185 160 aaKnown RBP11.06□□□□□ -0.64
NPHP4-204ENST00000460696 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.06□□□□□ -0.64
NPHP4-204ENST00000460696 KLHDC8AQ8IYD2 350 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 AP3S1Q92572 193 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 NECTIN4Q96NY8 510 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 OR51E2Q9H255 320 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 TMEM27Q9HBJ8 222 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 ACOT13Q9NPJ3 140 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 CDH7Q9ULB5 785 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 WDR45Q9Y484 360 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 PIKFYVEQ9Y2I7 2098 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 MYOFQ9NZM1 2061 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 KLHL33A6NCF5 533 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 KIAA0513O60268 411 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 ZNF821O75541 412 aaPredicted RBP11.06□□□□□ -0.64
NPHP4-204ENST00000460696 WISP3O95389 354 aaPredicted RBP11.06□□□□□ -0.64
NPHP4-204ENST00000460696 EPHA2P29317 976 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 RORCP51449 518 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 KLHL22Q53GT1 634 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 TANGO2Q6ICL3 276 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 POMZP3Q6PJE2 187 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 PLET1Q6UQ28 207 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 MSRB3Q8IXL7 192 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 FAM98AQ8NCA5 519 aaKnown RBP11.06□□□□□ -0.64
NPHP4-204ENST00000460696 RFKQ969G6 155 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 NXPE3Q969Y0 559 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 RBM18Q96H35 190 aaKnown RBP11.06□□□□□ -0.64
NPHP4-204ENST00000460696 TMEM80Q96HE8 168 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 CAMK1GQ96NX5 476 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 MMP27Q9H306 513 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 TIGARQ9NQ88 270 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 SLC35C2Q9NQQ7 365 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 C14orf119Q9NWQ9 140 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 MKLN1Q9UL63 735 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 FAM240BA0A1B0GVZ2 78 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 DUXAA6NLW8 204 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 IRAK1BP1Q5VVH5 260 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 FAM43BQ6ZT52 329 aaPredicted RBP11.06□□□□□ -0.64
NPHP4-204ENST00000460696 KRT74Q7RTS7 529 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 SLC9B2Q86UD5 537 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 OR4K5Q8NGD3 323 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 OR2L2Q8NH16 312 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 SH3YL1Q96HL8 342 aaPredicted RBP11.06□□□□□ -0.64
NPHP4-204ENST00000460696 SHDQ96IW2 340 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 LRR1Q96L50 414 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 MCHR1Q99705 422 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 IFT27Q9BW83 186 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 MGAMO43451 1857 aa11.06□□□□□ -0.64
NPHP4-204ENST00000460696 CENPFP49454 3210 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 ANKRD28O15084 1053 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 ITGAMP11215 1152 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 TYRP1P17643 537 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 SLC15A1P46059 708 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 CLK3P49761 638 aaKnown RBP11.05□□□□□ -0.64
NPHP4-204ENST00000460696 CSRP3P50461 194 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 CDH11P55287 796 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 SKP1P63208 163 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 COX10Q12887 443 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 QPRTQ15274 297 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 SPHARQ15513 63 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 SNAP47Q5SQN1 464 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 OR4C11Q6IEV9 310 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 MZT2AQ6P582 158 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 LHFPL3Q86UP9 236 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 PDZD3Q86UT5 571 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 UFD1Q92890 307 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 FAIMQ9NVQ4 179 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 GPR52Q9Y2T5 361 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 SLC35F4A4IF30 521 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 CENPXA8MT69 81 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 TAF4O00268 1085 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 BTN3A3O00478 584 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 GAPDHSO14556 408 aaPredicted RBP11.05□□□□□ -0.64
NPHP4-204ENST00000460696 IDH3BO43837 385 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 PLOD3O60568 738 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 DDCP20711 480 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 GGT2P36268 569 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 IL12RB1P42701 662 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 METAP1P53582 386 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 CDK3Q00526 305 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 ST3GAL3Q11203 375 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 SYPL1Q16563 259 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 NIPAL1Q6NVV3 410 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 OLIG3Q7RTU3 272 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 WDR53Q7Z5U6 358 aaPredicted RBP11.05□□□□□ -0.64
NPHP4-204ENST00000460696 RANBP3LQ86VV4 465 aaPredicted RBP11.05□□□□□ -0.64
NPHP4-204ENST00000460696 MMP21Q8N119 569 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 ZFP41Q8N8Y5 198 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms