RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 MLC1Q15049 377 aa10.84□□□□□ -0.67
SCN9A-204ENST00000452182 ELAVL1Q15717 326 aaKnown RBP10.84□□□□□ -0.67
SCN9A-204ENST00000452182 PRSS53Q2L4Q9 553 aa10.84□□□□□ -0.67
SCN9A-204ENST00000452182 MPEG1Q2M385 716 aa10.84□□□□□ -0.67
SCN9A-204ENST00000452182 ZNF385BQ569K4 471 aa10.84□□□□□ -0.67
SCN9A-204ENST00000452182 PAOXQ6QHF9 649 aa10.84□□□□□ -0.67
SCN9A-204ENST00000452182 KIRREL2Q6UWL6 708 aa10.84□□□□□ -0.67
SCN9A-204ENST00000452182 LANCL3Q6ZV70 420 aa10.84□□□□□ -0.67
SCN9A-204ENST00000452182 CPEB2Q7Z5Q1 589 aaKnown RBP10.84□□□□□ -0.67
SCN9A-204ENST00000452182 LRRC25Q8N386 305 aaPredicted RBP10.84□□□□□ -0.67
SCN9A-204ENST00000452182 BCAS4Q8TDM0 211 aa10.84□□□□□ -0.67
SCN9A-204ENST00000452182 ZCCHC14Q8WYQ9 949 aaKnown RBP10.84□□□□□ -0.67
SCN9A-204ENST00000452182 DGAT2Q96PD7 388 aa10.84□□□□□ -0.67
SCN9A-204ENST00000452182 DUSP26Q9BV47 211 aa10.84□□□□□ -0.67
SCN9A-204ENST00000452182 ZNF700Q9H0M5 742 aa10.84□□□□□ -0.67
SCN9A-204ENST00000452182 ADAP2Q9NPF8 381 aa10.84□□□□□ -0.67
SCN9A-204ENST00000452182 PPIEQ9UNP9 301 aaKnown RBP10.84□□□□□ -0.67
SCN9A-204ENST00000452182 IGHV1-45A0A0A0MS14 117 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 A0A1W2PS29 197 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 DYTNA2CJ06 578 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 PDPK1O15530 556 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 EFSO43281 561 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 PGRP06401 933 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 IFI6P09912 130 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 WT1P19544 449 aaPredicted RBP10.83□□□□□ -0.68
SCN9A-204ENST00000452182 NTSP30990 170 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 OTX2P32243 289 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 FEN1P39748 380 aaKnown RBP10.83□□□□□ -0.68
SCN9A-204ENST00000452182 POLR2JP52435 117 aaKnown RBP10.83□□□□□ -0.68
SCN9A-204ENST00000452182 UCNP55089 124 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 NME5P56597 212 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 OR4D2P58180 307 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 TLE3Q04726 772 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 LRRC74AQ0VAA2 488 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 SRSF6Q13247 344 aaKnown RBP10.83□□□□□ -0.68
SCN9A-204ENST00000452182 SPRED3Q2MJR0 410 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 FAM174BQ3ZCQ3 159 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 SFT2D3Q587I9 215 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 SPANXN4Q5MJ08 99 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 FAAH2Q6GMR7 532 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 ANKRD26P1Q6NSI1 321 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 BLOC1S3Q6QNY0 202 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 LRRC69Q6ZNQ3 347 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 MSANTD1Q6ZTZ1 278 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 MRGPREQ86SM8 312 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 FUNDC1Q8IVP5 155 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 OR11G2Q8NGC1 345 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 OR9I1Q8NGQ6 314 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 OR14A16Q8NHC5 309 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 SUN3Q8TAQ9 357 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 TSPEARQ8WU66 669 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 THAP4Q8WY91 577 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 DAZLQ92904 295 aaKnown RBP10.83□□□□□ -0.68
SCN9A-204ENST00000452182 ZBED6CLQ96FA7 236 aaPredicted RBP10.83□□□□□ -0.68
SCN9A-204ENST00000452182 BBS4Q96RK4 519 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 LPAR4Q99677 370 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 WDR77Q9BQA1 342 aaPredicted RBP10.83□□□□□ -0.68
SCN9A-204ENST00000452182 PRR14Q9BWN1 585 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 NMUR2Q9GZQ4 415 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 FAM120CQ9NX05 1096 aaKnown RBP10.83□□□□□ -0.68
SCN9A-204ENST00000452182 RAXQ9Y2V3 346 aa10.83□□□□□ -0.68
SCN9A-204ENST00000452182 CFAP47Q6ZTR5 3102 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 APC2O95996 2303 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 SAGE2PA6NJ88 616 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 TAF4O00268 1085 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 RNASET2O00584 256 aaKnown RBP10.82□□□□□ -0.68
SCN9A-204ENST00000452182 NDUFAB1O14561 156 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 OR10H2O60403 315 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 SCN2BO60939 215 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 COX6A1P12074 109 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 S100A3P33764 101 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 WNT3P56703 355 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 DUSP2Q05923 314 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 PCOLCEQ15113 449 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 ZNF750Q32MQ0 723 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 PGS1Q32NB8 556 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 LCE2DQ5TA82 110 aaPredicted RBP10.82□□□□□ -0.68
SCN9A-204ENST00000452182 ANXA8L1Q5VT79 327 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 BROXQ5VW32 411 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 FAM180BQ6P0A1 224 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 NDUFAF7Q7L592 441 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 MTDHQ86UE4 582 aaKnown RBP10.82□□□□□ -0.68
SCN9A-204ENST00000452182 CCDC116Q8IYX3 515 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 ZSCAN1Q8NBB4 408 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 CCDC197Q8NCU1 140 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 MORN4Q8NDC4 146 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 VPS37AQ8NEZ2 397 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 ZFP28Q8NHY6 868 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 PSMA8Q8TAA3 256 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 ZNF675Q8TD23 568 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 PTPMT1Q8WUK0 201 aaPredicted RBP10.82□□□□□ -0.68
SCN9A-204ENST00000452182 NUDT8Q8WV74 236 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 RIT1Q92963 219 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 CIDECQ96AQ7 238 aaPredicted RBP10.82□□□□□ -0.68
SCN9A-204ENST00000452182 C8orf44Q96CB5 159 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 ERP27Q96DN0 273 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 AMDHD1Q96NU7 426 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 TUBB6Q9BUF5 446 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 MYLK2Q9H1R3 596 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 CXorf21Q9HAI6 301 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms