RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 ASB15Q8WXK1 588 aa11.81□□□□□ -0.52
PRPF40A-203ENST00000448428 ART5Q96L15 291 aa11.81□□□□□ -0.52
PRPF40A-203ENST00000448428 CNPPD1Q9BV87 410 aa11.81□□□□□ -0.52
PRPF40A-203ENST00000448428 TSPAN10Q9H1Z9 355 aaPredicted RBP11.81□□□□□ -0.52
PRPF40A-203ENST00000448428 CXorf21Q9HAI6 301 aa11.81□□□□□ -0.52
PRPF40A-203ENST00000448428 TNFRSF12AQ9NP84 129 aa11.81□□□□□ -0.52
PRPF40A-203ENST00000448428 ERVK-11Q9UQG0 969 aa11.81□□□□□ -0.52
PRPF40A-203ENST00000448428 ERVK-19Q9WJR5 959 aa11.81□□□□□ -0.52
PRPF40A-203ENST00000448428 FLNCQ14315 2725 aa11.81□□□□□ -0.52
PRPF40A-203ENST00000448428 POLEQ07864 2286 aa11.81□□□□□ -0.52
PRPF40A-203ENST00000448428 GTF3C1Q12789 2109 aa11.81□□□□□ -0.52
PRPF40A-203ENST00000448428 C1orf226A1L170 272 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 SERTM1A2A2V5 107 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 CCDC151A5D8V7 595 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 A8MVJ9 347 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 LRRTM2O43300 516 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 PEX1O43933 1283 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 LDLRP01130 860 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 CLPSP04118 112 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 STSP08842 583 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 CPMP14384 443 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 SLC37A1P57057 533 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 TRA2BP62995 288 aaKnown RBP11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 BTKQ06187 659 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 ASPHQ12797 758 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 PCLAFQ15004 111 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 MPEG1Q2M385 716 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 C4orf17Q53FE4 359 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 PIGGQ5H8A4 983 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 LIPMQ5VYY2 423 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 SLC48A1Q6P1K1 146 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 C10orf107Q8IVU9 208 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 GPALPP1Q8IXQ4 340 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 SRRM1Q8IYB3 904 aaKnown RBP11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 MREGQ8N565 214 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 NUBPLQ8TB37 319 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 APIPQ96GX9 242 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 APOPT1Q96IL0 206 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 SHCBP1LQ9BZQ2 653 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 TIMMDC1Q9NPL8 285 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 DEPPQ9NTK1 212 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 HPF1Q9NWY4 346 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 MKS1Q9NXB0 559 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 HEY2Q9UBP5 337 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 MCM8Q9UJA3 840 aa11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 KLF13Q9Y2Y9 288 aaPredicted RBP11.8□□□□□ -0.52
PRPF40A-203ENST00000448428 NPIPA5E9PKD4 350 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 H3BQF6 201 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 KLRC4-KLRK1H3BQV0 150 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 ASNA1O43681 348 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 TRIM13O60858 407 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 SPAG7O75391 227 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 CT62P0C5K7 136 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 CREB1P16220 341 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 PORP16435 677 aaPredicted RBP11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 SSTR4P31391 388 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 DEKP35659 375 aaKnown RBP11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 MEOX1P50221 254 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 GPR85P60893 370 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 KRTCAP3Q53RY4 240 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 MYO7BQ6PIF6 2116 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 RNF111Q6ZNA4 994 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 SIAH3Q8IW03 269 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 PSD4Q8NDX1 1056 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 C11orf24Q96F05 449 aaPredicted RBP11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 GPR137Q96N19 417 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 TMEM109Q9BVC6 243 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 GATA5Q9BWX5 397 aaPredicted RBP11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 IQCGQ9H095 443 aaKnown RBP11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 SLC17A7Q9P2U7 560 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 RAB21Q9UL25 225 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 NPIPA1Q9UND3 350 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 DLGAP4Q9Y2H0 992 aa11.79□□□□□ -0.52
PRPF40A-203ENST00000448428 GNG14A0A1W2PPG7 69 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 OR6C76A6NM76 312 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 PCDH7O60245 1069 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 CRCPO75575 148 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 ERAL1O75616 437 aaKnown RBP11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 NADKO95544 446 aaPredicted RBP11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 CSNK2A2P19784 350 aaPredicted RBP11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 S1PR1P21453 382 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 NT5EP21589 574 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 ALDH3A1P30838 453 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 FEN1P39748 380 aaKnown RBP11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 RFC3P40938 356 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 ALDH9A1P49189 494 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 DUSP2Q05923 314 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 ACSM2AQ08AH3 577 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 MGAT2Q10469 447 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 FUT7Q11130 342 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 SPIN4Q56A73 249 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 SPDYAQ5MJ70 313 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 C1QL3Q5VWW1 255 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 ACSM2BQ68CK6 577 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 FAM180BQ6P0A1 224 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 GALNT18Q6P9A2 607 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 OPN5Q6U736 354 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 LYPD8Q6UX82 237 aa11.78□□□□□ -0.52
PRPF40A-203ENST00000448428 RTL4Q6ZR62 310 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms