RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 CCDC116Q8IYX3 515 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 CIDECQ96AQ7 238 aaPredicted RBP14.77□□□□□ -0.05
USP40-206ENST00000443711 ZBED6CLQ96FA7 236 aaPredicted RBP14.77□□□□□ -0.05
USP40-206ENST00000443711 ACSS1Q9NUB1 689 aaPredicted RBP14.77□□□□□ -0.05
USP40-206ENST00000443711 FAM120CQ9NX05 1096 aaKnown RBP14.77□□□□□ -0.05
USP40-206ENST00000443711 SSUH2Q9Y2M2 353 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 CAPN7Q9Y6W3 813 aa14.77□□□□□ -0.05
USP40-206ENST00000443711 DYTNA2CJ06 578 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 A8MUA0 341 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 PEX12O00623 359 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 SOCS6O14544 535 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 CFLARO15519 480 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 DYRK3O43781 588 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 ATP1B1P05026 303 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 PGRP06401 933 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 NT5EP21589 574 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 FRKP42685 505 aaPredicted RBP14.76□□□□□ -0.05
USP40-206ENST00000443711 NCBP2P52298 156 aaKnown RBP eCLIP14.76□□□□□ -0.05
USP40-206ENST00000443711 MANFP55145 182 aaKnown RBP14.76□□□□□ -0.05
USP40-206ENST00000443711 EEF1A2Q05639 463 aaKnown RBP14.76□□□□□ -0.05
USP40-206ENST00000443711 DUSP2Q05923 314 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 MPEG1Q2M385 716 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 CRTC2Q53ET0 693 aaPredicted RBP14.76□□□□□ -0.05
USP40-206ENST00000443711 C6orf163Q5TEZ5 329 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 BROXQ5VW32 411 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 KIRREL2Q6UWL6 708 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 SPACA3Q8IXA5 215 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 ZSCAN1Q8NBB4 408 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 OR11G2Q8NGC1 345 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 ADAMTS17Q8TE56 1095 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 TSPEARQ8WU66 669 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 OR5P2Q8WZ92 322 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 PPWD1Q96BP3 646 aaKnown RBP14.76□□□□□ -0.05
USP40-206ENST00000443711 C8orf44Q96CB5 159 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 AMDHD1Q96NU7 426 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 DCBLD2Q96PD2 775 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 OR52E6Q96RD3 313 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 LPAR4Q99677 370 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 MYLK2Q9H1R3 596 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 CLCA3PQ9Y6N3 262 aa14.76□□□□□ -0.05
USP40-206ENST00000443711 PRSS51A0A1B0GVH4 220 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 A0A1W2PQ72 361 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 CDC14CA4D256 554 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 CCDC154A6NI56 674 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 NR5A2O00482 541 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 RNASET2O00584 256 aaKnown RBP14.75□□□□□ -0.05
USP40-206ENST00000443711 SNRPB2P08579 225 aaKnown RBP14.75□□□□□ -0.05
USP40-206ENST00000443711 WNT3P56703 355 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 PHC1P78364 1004 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 LRRC74AQ0VAA2 488 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 RCAN2Q14206 197 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 MLC1Q15049 377 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 TERF2Q15554 542 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 MAPRE2Q15555 327 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 PAPD4Q6PIY7 484 aaKnown RBP14.75□□□□□ -0.05
USP40-206ENST00000443711 MSANTD1Q6ZTZ1 278 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 NDUFAF7Q7L592 441 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 ZNF551Q7Z340 670 aaPredicted RBP14.75□□□□□ -0.05
USP40-206ENST00000443711 MRGPREQ86SM8 312 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 OR14A16Q8NHC5 309 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 SUN3Q8TAQ9 357 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 PTPMT1Q8WUK0 201 aaPredicted RBP14.75□□□□□ -0.05
USP40-206ENST00000443711 ZCCHC14Q8WYQ9 949 aaKnown RBP14.75□□□□□ -0.05
USP40-206ENST00000443711 DAZLQ92904 295 aaKnown RBP14.75□□□□□ -0.05
USP40-206ENST00000443711 RIT1Q92963 219 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 SPDL1Q96EA4 605 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 LRRC37BQ96QE4 947 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 TUBB6Q9BUF5 446 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 CCDC106Q9BWC9 280 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 ZNF700Q9H0M5 742 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 GLIPR2Q9H4G4 154 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 RMND5AQ9H871 391 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 SLAMF7Q9NQ25 335 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 P4HTMQ9NXG6 502 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 ARMCX1Q9P291 453 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 PCDHGB4Q9UN71 923 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 RAXQ9Y2V3 346 aa14.75□□□□□ -0.05
USP40-206ENST00000443711 IGHV1-45A0A0A0MS14 117 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 IGHV3-20A0A0C4DH32 117 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 SAGE2PA6NJ88 616 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 C17orf105B2RV13 164 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 NKX2-8O15522 239 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 EFSO43281 561 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 SCN2BO60939 215 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 SEC24DO94855 1032 aaPredicted RBP14.74□□□□□ -0.05
USP40-206ENST00000443711 SLITRK5O94991 958 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 COX6A1P12074 109 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 WT1P19544 449 aaPredicted RBP14.74□□□□□ -0.05
USP40-206ENST00000443711 EFNA1P20827 205 aaPredicted RBP14.74□□□□□ -0.05
USP40-206ENST00000443711 GPC1P35052 558 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 FOXK2Q01167 660 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 MAP4K2Q12851 820 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 ZNF267Q14586 743 aaPredicted RBP14.74□□□□□ -0.05
USP40-206ENST00000443711 PCOLCEQ15113 449 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 SPRED3Q2MJR0 410 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 VPS26BQ4G0F5 336 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 TIGD2Q4W5G0 525 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 CCDC81Q6ZN84 652 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 DGAT2L6Q6ZPD8 337 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 GK5Q6ZS86 529 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms