RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 GPR34Q9UPC5 381 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 FAM32AQ9Y421 112 aaKnown RBP8.98□□□□□ -0.97
CUX1-206ENST00000437600 IGKV1-8A0A0C4DH67 115 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 ZNF701M0R085 212 aaPredicted RBP8.98□□□□□ -0.97
CUX1-206ENST00000437600 FRS3O43559 492 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 GADD45GO95257 159 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 RECKO95980 971 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 ADH1BP00325 375 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 CDH3P22223 829 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 PXNP49023 591 aaPredicted RBP8.98□□□□□ -0.97
CUX1-206ENST00000437600 HOXC5Q00444 222 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 PTGES3Q15185 160 aaKnown RBP8.98□□□□□ -0.97
CUX1-206ENST00000437600 GPR19Q15760 415 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 RFX4Q33E94 735 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 KHDRBS2Q5VWX1 349 aaKnown RBP8.98□□□□□ -0.97
CUX1-206ENST00000437600 FAHD1Q6P587 224 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 ADAMTSL4Q6UY14 1074 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 C6orf120Q7Z4R8 191 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 P2RY8Q86VZ1 359 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 TP53I13Q8NBR0 393 aaPredicted RBP8.98□□□□□ -0.97
CUX1-206ENST00000437600 SIMC1Q8NDZ2 872 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 SETD9Q8NE22 299 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 OR8K5Q8NH50 307 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 PHF10Q8WUB8 498 aaKnown RBP8.98□□□□□ -0.97
CUX1-206ENST00000437600 GGHQ92820 318 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 TSACCQ96A04 125 aaPredicted RBP8.98□□□□□ -0.97
CUX1-206ENST00000437600 REPS1Q96D71 796 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 LGALS12Q96DT0 336 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 PDXPQ96GD0 296 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 SH3YL1Q96HL8 342 aaPredicted RBP8.98□□□□□ -0.97
CUX1-206ENST00000437600 ZNF514Q96K75 400 aaPredicted RBP8.98□□□□□ -0.97
CUX1-206ENST00000437600 TEFMQ96QE5 360 aaKnown RBP8.98□□□□□ -0.97
CUX1-206ENST00000437600 BHLHE41Q9C0J9 482 aaPredicted RBP8.98□□□□□ -0.97
CUX1-206ENST00000437600 EHD1Q9H4M9 534 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 EPHX3Q9H6B9 360 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 ITM2CQ9NQX7 267 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 ATAD3AQ9NVI7 634 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 MS4A12Q9NXJ0 267 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 ATP6V1HQ9UI12 483 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 CABIN1Q9Y6J0 2220 aa8.98□□□□□ -0.97
CUX1-206ENST00000437600 CELSR3Q9NYQ7 3312 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 PNMA8CA0A1B0GUJ8 204 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 SERTM1A2A2V5 107 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 PRAMEF27A3QJZ7 478 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 C4orf51C9J302 202 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 FOXE1O00358 373 aaPredicted RBP8.97□□□□□ -0.97
CUX1-206ENST00000437600 EML2O95834 649 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 DBTP11182 482 aaKnown RBP8.97□□□□□ -0.97
CUX1-206ENST00000437600 ITGAMP11215 1152 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 HSD3B1P14060 373 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 IL1RNP18510 177 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 HSD3B2P26439 372 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 PCGF2P35227 344 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 BSGP35613 385 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 ST3GAL4Q11206 333 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 ENPP2Q13822 863 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 SEC23BQ15437 767 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 MOGQ16653 247 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 ZNF542PQ5EBM4 170 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 METRNLQ641Q3 311 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 TRIM40Q6P9F5 258 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 SFTPA2Q8IWL1 248 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 TMEFF1Q8IYR6 380 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 FAM3CQ92520 227 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 TMEM19Q96HH6 336 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 MRGPRX1Q96LB2 322 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 NLNQ9BYT8 704 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 AICDAQ9GZX7 198 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 DPEP2Q9H4A9 486 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 GPN2Q9H9Y4 310 aaPredicted RBP8.97□□□□□ -0.97
CUX1-206ENST00000437600 SPHK1Q9NYA1 384 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 ZNF226Q9NYT6 803 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 ITGB1BP2Q9UKP3 347 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 RBMX2Q9Y388 322 aaKnown RBP8.97□□□□□ -0.97
CUX1-206ENST00000437600 KCNE3Q9Y6H6 103 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 ALPK2Q86TB3 2170 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 A0A1W2PPV9 198 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 C5orf58C9J3I9 102 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 M0R3H8 397 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 STK25O00506 426 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 OXSR1O95747 527 aaPredicted RBP8.97□□□□□ -0.97
CUX1-206ENST00000437600 CEACAM5P06731 702 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 CKMT1AP12532 417 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 TNNI3P19429 210 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 ITIH1P19827 911 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 GPC1P35052 558 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 ST13P50502 369 aaKnown RBP8.97□□□□□ -0.97
CUX1-206ENST00000437600 DSTNP60981 165 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 RPS21P63220 83 aaKnown RBP8.97□□□□□ -0.97
CUX1-206ENST00000437600 DUSP2Q05923 314 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 TDGQ13569 410 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 MICAQ29983 383 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 ZC3H12BQ5HYM0 836 aaKnown RBP8.97□□□□□ -0.97
CUX1-206ENST00000437600 C6orf183Q5T699 404 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 UBE3DQ7Z6J8 389 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 TAGAPQ8N103 731 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 IQCF1Q8N6M8 205 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 COL26A1Q96A83 441 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 C16orf58Q96GQ5 468 aa8.97□□□□□ -0.97
CUX1-206ENST00000437600 HRASLS5Q96KN8 279 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms