RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 UBTD1Q9HAC8 227 aa3.76□□□□□ -1.81
HMGB3-203ENST00000430118 VAT1LQ9HCJ6 419 aa3.76□□□□□ -1.81
HMGB3-203ENST00000430118 VCX3AQ9NNX9 186 aa3.76□□□□□ -1.81
HMGB3-203ENST00000430118 SLC40A1Q9NP59 571 aa3.76□□□□□ -1.81
HMGB3-203ENST00000430118 TMEM9BQ9NQ34 198 aa3.76□□□□□ -1.81
HMGB3-203ENST00000430118 TCF7L2Q9NQB0 619 aa3.76□□□□□ -1.81
HMGB3-203ENST00000430118 PRELID1Q9Y255 219 aa3.76□□□□□ -1.81
HMGB3-203ENST00000430118 FOXA2Q9Y261 457 aaPredicted RBP3.76□□□□□ -1.81
HMGB3-203ENST00000430118 WDR83OSQ9Y284 106 aa3.76□□□□□ -1.81
HMGB3-203ENST00000430118 RPH3AQ9Y2J0 694 aaPredicted RBP3.76□□□□□ -1.81
HMGB3-203ENST00000430118 TEX264Q9Y6I9 313 aa3.76□□□□□ -1.81
HMGB3-203ENST00000430118 LAMA4Q16363 1823 aa3.76□□□□□ -1.81
HMGB3-203ENST00000430118 NFASCO94856 1347 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 SPTBN2O15020 2390 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 FRYQ5TBA9 3013 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 CTAGE9A4FU28 777 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 E9PI62 339 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 PPEF2O14830 753 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 ARPC2O15144 300 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 MAGEB2O15479 319 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 TEX28O15482 410 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 SCO2O43819 266 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 PRAF2O60831 178 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 KDM4BO94953 1096 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 PMS2P2O95744 297 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 LIPFP07098 398 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 PRSS2P07478 247 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 GSTA2P09210 222 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 CTAGE8P0CG41 777 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 SMIM18P0DKX4 95 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 GP1BBP13224 206 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 TDGF1P13385 188 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 ARF4P18085 180 aaPredicted RBP3.75□□□□□ -1.81
HMGB3-203ENST00000430118 ELAVL4P26378 380 aaKnown RBP3.75□□□□□ -1.81
HMGB3-203ENST00000430118 MNDAP41218 407 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 ASMTP46597 345 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 SERPINB8P50452 374 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 SERPINH1P50454 418 aaKnown RBP3.75□□□□□ -1.81
HMGB3-203ENST00000430118 VAMP7P51809 220 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 ATXN3P54252 364 aaPredicted RBP3.75□□□□□ -1.81
HMGB3-203ENST00000430118 UCP2P55851 309 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 PITX1P78337 314 aaPredicted RBP3.75□□□□□ -1.81
HMGB3-203ENST00000430118 BASP1P80723 227 aaKnown RBP3.75□□□□□ -1.81
HMGB3-203ENST00000430118 CCZ1BP86790 482 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 CCZ1P86791 482 aaPredicted RBP3.75□□□□□ -1.81
HMGB3-203ENST00000430118 COX10Q12887 443 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 ZBTB17Q13105 803 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 TRIM29Q14134 588 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 NFATC4Q14934 902 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 SF3A2Q15428 464 aaKnown RBP3.75□□□□□ -1.81
HMGB3-203ENST00000430118 MAPK11Q15759 364 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 KRTAP15-1Q3LI76 137 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 IFI44LQ53G44 452 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 CLLU1OSQ5K130 101 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 BEND6Q5SZJ8 279 aaPredicted RBP3.75□□□□□ -1.81
HMGB3-203ENST00000430118 CCNYL2Q5T2Q4 361 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 PRAMEF8Q5VWM4 474 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 OR7E24Q6IFN5 339 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 BTNL8Q6UX41 500 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 RBM43Q6ZSC3 357 aaKnown RBP3.75□□□□□ -1.81
HMGB3-203ENST00000430118 C3orf62Q6ZUJ4 267 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 NLRP9Q7RTR0 991 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 NANOGNBQ7Z5D8 188 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 CTAGE4Q8IX94 777 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 GPR65Q8IYL9 337 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 SLC7A5P1Q8MH63 180 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 RNF10Q8N5U6 811 aaKnown RBP3.75□□□□□ -1.81
HMGB3-203ENST00000430118 OR4K1Q8NGD4 311 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 OR13J1Q8NGT2 312 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 FGFBP3Q8TAT2 258 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 SLC20A1Q8WUM9 679 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 FGF13Q92913 245 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 ELSPBP1Q96BH3 223 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 PHF21BQ96EK2 531 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 OXNAD1Q96HP4 312 aaPredicted RBP3.75□□□□□ -1.81
HMGB3-203ENST00000430118 EPSTI1Q96J88 318 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 GDAP1L1Q96MZ0 367 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 FAM111AQ96PZ2 611 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 PKP2Q99959 881 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 SLC2A11Q9BYW1 496 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 GCOM2Q9BZD3 368 aaPredicted RBP3.75□□□□□ -1.81
HMGB3-203ENST00000430118 SLC7A5P2Q9GIP4 190 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 YIPF3Q9GZM5 350 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 FAM192AQ9GZU8 254 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 NAT10Q9H0A0 1025 aaKnown RBP3.75□□□□□ -1.81
HMGB3-203ENST00000430118 NT5C3AQ9H0P0 336 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 TMEM245Q9H330 911 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 HEBP1Q9NRV9 189 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 TBC1D13Q9NVG8 400 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 TAS2R3Q9NYW6 316 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 UBAP1Q9NZ09 502 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 NINJ2Q9NZG7 142 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 PKD2L2Q9NZM6 624 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 ACTR3BQ9P1U1 418 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 ZDHHC2Q9UIJ5 367 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 TMCC3Q9ULS5 477 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 DDX19BQ9UMR2 479 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 OR2W1Q9Y3N9 320 aa3.75□□□□□ -1.81
HMGB3-203ENST00000430118 GCN1Q92616 2671 aaKnown RBP3.75□□□□□ -1.81
HMGB3-203ENST00000430118 EVPLQ92817 2033 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms