RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 EPN3Q9H201 632 aa15.89■□□□□ 0.13
COL7A1-202ENST00000422991 CLMPQ9H6B4 373 aa15.89■□□□□ 0.13
COL7A1-202ENST00000422991 PNO1Q9NRX1 252 aaKnown RBP15.89■□□□□ 0.13
COL7A1-202ENST00000422991 ENTPD4Q9Y227 616 aa15.89■□□□□ 0.13
COL7A1-202ENST00000422991 POLHQ9Y253 713 aa15.89■□□□□ 0.13
COL7A1-202ENST00000422991 A8MUA0 341 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 MYO1GB0I1T2 1018 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 PDPK1O15530 556 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 OR10H2O60403 315 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 ATP1B1P05026 303 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 NTSP30990 170 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 GALNSP34059 522 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 ATP4BP51164 291 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 IRX1P78414 480 aaPredicted RBP15.88■□□□□ 0.13
COL7A1-202ENST00000422991 RPS6KA2Q15349 733 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 MPEG1Q2M385 716 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 DGAT2L6Q6ZPD8 337 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 MIER2Q8N344 545 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 LRRC25Q8N386 305 aaPredicted RBP15.88■□□□□ 0.13
COL7A1-202ENST00000422991 OR14A16Q8NHC5 309 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 SUN3Q8TAQ9 357 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 PTPMT1Q8WUK0 201 aaPredicted RBP15.88■□□□□ 0.13
COL7A1-202ENST00000422991 SNRNP27Q8WVK2 155 aaKnown RBP15.88■□□□□ 0.13
COL7A1-202ENST00000422991 TESCQ96BS2 214 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 BBS4Q96RK4 519 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 LPAR4Q99677 370 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 TUBB6Q9BUF5 446 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 ZNF385DQ9H6B1 395 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 SLAMF7Q9NQ25 335 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 ZIM2Q9NZV7 527 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 SH3BP4Q9P0V3 963 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 TRIM33Q9UPN9 1127 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 MAN2B2Q9Y2E5 1009 aa15.88■□□□□ 0.13
COL7A1-202ENST00000422991 COPG1Q9Y678 874 aaKnown RBP15.88■□□□□ 0.13
COL7A1-202ENST00000422991 NSG1A0A0A6YYJ2 146 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 C17orf105B2RV13 164 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 SNX3O60493 162 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 LAMP1P11279 417 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 DDX5P17844 614 aaKnown RBP15.87■□□□□ 0.13
COL7A1-202ENST00000422991 GPX3P22352 226 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 IL12AP29459 219 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 FRKP42685 505 aaPredicted RBP15.87■□□□□ 0.13
COL7A1-202ENST00000422991 STX1BP61266 288 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 SQLEQ14534 574 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 SPRED3Q2MJR0 410 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 DPY19L1Q2PZI1 675 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 DCAF10Q5QP82 559 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 CPTPQ5TA50 214 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 METTL21CQ5VZV1 264 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 NFAM1Q8NET5 270 aaPredicted RBP15.87■□□□□ 0.13
COL7A1-202ENST00000422991 CIDECQ96AQ7 238 aaPredicted RBP15.87■□□□□ 0.13
COL7A1-202ENST00000422991 PPWD1Q96BP3 646 aaKnown RBP15.87■□□□□ 0.13
COL7A1-202ENST00000422991 COQ8BQ96D53 544 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 RBM18Q96H35 190 aaKnown RBP15.87■□□□□ 0.13
COL7A1-202ENST00000422991 CRELD1Q96HD1 420 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 IMMP1LQ96LU5 166 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 PRPF18Q99633 342 aaKnown RBP15.87■□□□□ 0.13
COL7A1-202ENST00000422991 RABEP2Q9H5N1 569 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 PRORYQ9H606 182 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 CXorf21Q9HAI6 301 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 ZNF160Q9HCG1 818 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 ATAD3AQ9NVI7 634 aa15.87■□□□□ 0.13
COL7A1-202ENST00000422991 IGSF10Q6WRI0 2623 aa15.86■□□□□ 0.13
COL7A1-202ENST00000422991 MASP2O00187 686 aa15.86■□□□□ 0.13
COL7A1-202ENST00000422991 SLC22A3O75751 556 aa15.86■□□□□ 0.13
COL7A1-202ENST00000422991 NCF2P19878 526 aaPredicted RBP15.86■□□□□ 0.13
COL7A1-202ENST00000422991 ZFP36L2P47974 494 aaKnown RBP15.86■□□□□ 0.13
COL7A1-202ENST00000422991 SLC26A5P58743 744 aa15.86■□□□□ 0.13
COL7A1-202ENST00000422991 CXADRP78310 365 aa15.86■□□□□ 0.13
COL7A1-202ENST00000422991 DEFB109BQ30KR1 87 aa15.86■□□□□ 0.13
COL7A1-202ENST00000422991 PLAG1Q6DJT9 500 aa15.86■□□□□ 0.13
COL7A1-202ENST00000422991 GLB1L3Q8NCI6 653 aaPredicted RBP15.86■□□□□ 0.13
COL7A1-202ENST00000422991 OR8J2Q8NGG1 315 aa15.86■□□□□ 0.13
COL7A1-202ENST00000422991 OR9I1Q8NGQ6 314 aa15.86■□□□□ 0.13
COL7A1-202ENST00000422991 DAZLQ92904 295 aaKnown RBP15.86■□□□□ 0.13
COL7A1-202ENST00000422991 RIT1Q92963 219 aa15.86■□□□□ 0.13
COL7A1-202ENST00000422991 FER1L6-AS2Q96M78 137 aa15.86■□□□□ 0.13
COL7A1-202ENST00000422991 AMDHD1Q96NU7 426 aa15.86■□□□□ 0.13
COL7A1-202ENST00000422991 ZBTB18Q99592 522 aa15.86■□□□□ 0.13
COL7A1-202ENST00000422991 BHLHE41Q9C0J9 482 aaPredicted RBP15.86■□□□□ 0.13
COL7A1-202ENST00000422991 PPIEQ9UNP9 301 aaKnown RBP15.86■□□□□ 0.13
COL7A1-202ENST00000422991 CLCA3PQ9Y6N3 262 aa15.86■□□□□ 0.13
COL7A1-202ENST00000422991 MED13Q9UHV7 2174 aa15.85■□□□□ 0.13
COL7A1-202ENST00000422991 ARGFXA6NJG6 315 aa15.85■□□□□ 0.13
COL7A1-202ENST00000422991 C9JVG2 144 aa15.85■□□□□ 0.13
COL7A1-202ENST00000422991 DDAH2O95865 285 aa15.85■□□□□ 0.13
COL7A1-202ENST00000422991 TNNI3P19429 210 aa15.85■□□□□ 0.13
COL7A1-202ENST00000422991 NT5EP21589 574 aa15.85■□□□□ 0.13
COL7A1-202ENST00000422991 MPIP34949 423 aa15.85■□□□□ 0.13
COL7A1-202ENST00000422991 PTGER1P34995 402 aa15.85■□□□□ 0.13
COL7A1-202ENST00000422991 KIR3DL1P43629 444 aa15.85■□□□□ 0.13
COL7A1-202ENST00000422991 NCBP2P52298 156 aaKnown RBP eCLIP15.85■□□□□ 0.13
COL7A1-202ENST00000422991 RRADP55042 308 aa15.85■□□□□ 0.13
COL7A1-202ENST00000422991 SRSF11Q05519 484 aaKnown RBP15.85■□□□□ 0.13
COL7A1-202ENST00000422991 Q0VFX4 171 aa15.85■□□□□ 0.13
COL7A1-202ENST00000422991 LTB4RQ15722 352 aa15.85■□□□□ 0.13
COL7A1-202ENST00000422991 EXT1Q16394 746 aa15.85■□□□□ 0.13
COL7A1-202ENST00000422991 PGS1Q32NB8 556 aa15.85■□□□□ 0.13
COL7A1-202ENST00000422991 FAM174BQ3ZCQ3 159 aa15.85■□□□□ 0.13
COL7A1-202ENST00000422991 SPANXN4Q5MJ08 99 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms