RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SLC22A5O76082 557 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 KNG1P01042 644 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 ETV5P41161 510 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 PCBP2Q15366 365 aaKnown RBP eCLIP12.82□□□□□ -0.362e-14■■■□□ 15.9
CCDC88A-204ENST00000413716 PCGF3Q3KNV8 242 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 PRAMEF14Q5SWL7 426 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 SSX7Q7RTT5 188 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 OR10R2Q8NGX6 335 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 GBA2Q9HCG7 927 aaPredicted RBP12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 ARHGEF15O94989 841 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 DIRAS1O95057 198 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 ALDOBP05062 364 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 CSF1P09603 554 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 SNU13P55769 128 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 SCAPQ12770 1279 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 ACSBG2Q5FVE4 666 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 CNKSR3Q6P9H4 555 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 ZBTB45Q96K62 511 aaPredicted RBP12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 ACP6Q9NPH0 428 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 NR2E3Q9Y5X4 410 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 SLC35F1Q5T1Q4 408 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 CARD17Q5XLA6 110 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 XKR5Q6UX68 686 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 SCML4Q8N228 414 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 NANPQ8TBE9 248 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 SLC2A12Q8TD20 617 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 TMX2Q9Y320 296 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 C11orf98E9PRG8 122 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 B4GAT1O43505 415 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 CDK6Q00534 326 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 PHYHD1Q5SRE7 291 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 RNF130Q86XS8 419 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 GPR152Q8TDT2 470 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 CSPG4P5Q96PW8 444 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 GRXCR1A8MXD5 290 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 PTPN2P17706 415 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 NR4A2P43354 598 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 LRRC32Q14392 662 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 FAM205BPQ63HN1 556 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 OR9A4Q8NGU2 314 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 CGREF1Q99674 301 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 PITX2Q99697 317 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 RBCK1Q9BYM8 510 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 EBF2Q9HAK2 575 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 SIX4Q9UIU6 781 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 NMBRP28336 390 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 FXYD4P59646 89 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 MEP1AQ16819 746 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 PDLIM3Q53GG5 364 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 STEAP4Q687X5 459 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 LHX5Q9H2C1 402 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 CPA4Q9UI42 421 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 UGT2B7P16662 529 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 ETV1P50549 477 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 GINS1Q14691 196 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 SFRP5Q5T4F7 317 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 OR52W1Q6IF63 320 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 CCBE1Q6UXH8 406 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 ESPNLQ6ZVH7 1005 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 KIAA0907Q7Z7F0 614 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 IL21RQ9HBE5 538 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 TMEM94Q12767 1356 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 GJB1P08034 283 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 RBM23Q86U06 439 aaKnown RBP12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 CD163Q86VB7 1156 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 TMEM151AQ8N4L1 468 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 PLPP5Q8NEB5 264 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 OR51T1Q8NGJ9 327 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 NAA11Q9BSU3 229 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 MRPS17Q9Y2R5 130 aaKnown RBP12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 NUBP2Q9Y5Y2 271 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 POMT1Q9Y6A1 747 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 CDK5RAP2Q96SN8 1893 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 OR6C75A6NL08 312 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 SLC31A2O15432 143 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 MLLT10P55197 1068 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 C9orf57Q5W0N0 161 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 DNAJC5BQ9UF47 199 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 TESQ9UGI8 421 aaKnown RBP12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 SLC6A5Q9Y345 797 aa12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 PUS1Q9Y606 427 aaKnown RBP eCLIP12.81□□□□□ -0.36
CCDC88A-204ENST00000413716 OPN1SWP03999 348 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 ZNRF4Q8WWF5 429 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 POLMQ9NP87 494 aaPredicted RBP12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 NEO1Q92859 1461 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 MIA3Q5JRA6 1907 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 A0A1W2PPK0 400 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 RAB28P51157 221 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 SLC30A7Q8NEW0 376 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 GINS3Q9BRX5 216 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 GAREM1Q9H706 876 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 UFSP2Q9NUQ7 469 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 C2orf42Q9NWW7 574 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 FANCGO15287 622 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 CREG1O75629 220 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 SBK2P0C263 348 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 ANKRD22Q5VYY1 191 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 ZNF585AQ6P3V2 769 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 CANT1Q8WVQ1 401 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms