RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 COX15Q7KZN9 410 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 GPR135Q8IZ08 494 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 TMEM145Q8NBT3 493 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 GPR151Q8TDV0 419 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 KCTD13Q8WZ19 329 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 ATG4CQ96DT6 458 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 THAP7Q9BT49 309 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-206ENST00000409809 SLCO5A1Q9H2Y9 848 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 SDHAF3Q9NRP4 125 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 TMPRSS4Q9NRS4 437 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 INTS6Q9UL03 887 aaKnown RBP12.39□□□□□ -0.43
COL6A3-206ENST00000409809 SULT1C4O75897 302 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 PIAS1O75925 651 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 SFXN5Q8TD22 340 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 RHBGQ9H310 441 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 SRA1Q9HD15 236 aaKnown RBP12.39□□□□□ -0.43
COL6A3-206ENST00000409809 TXNL4BQ9NX01 149 aaKnown RBP12.39□□□□□ -0.43
COL6A3-206ENST00000409809 MAFO75444 373 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-206ENST00000409809 KCNK2O95069 426 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 RCAN2Q14206 197 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 C4orf17Q53FE4 359 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 CACUL1Q86Y37 369 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 RDH10Q8IZV5 341 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 HAS2Q92819 552 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 KREMEN1Q96MU8 473 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 PRRG4Q9BZD6 226 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 OR51I1Q9H343 314 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 FKBPLQ9UIM3 349 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 CEPT1Q9Y6K0 416 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 RPS10-NUDT3A0A1W2PQS6 291 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 SLC43A1O75387 559 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 RPS10P46783 165 aaKnown RBP12.38□□□□□ -0.43
COL6A3-206ENST00000409809 MFSD6LQ8IWD5 586 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 ZSCAN4Q8NAM6 433 aaPredicted RBP12.38□□□□□ -0.43
COL6A3-206ENST00000409809 EBPLQ9BY08 206 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 PLCXD1Q9NUJ7 323 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 AIG1Q9NVV5 245 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 IDSP22304 550 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 SPCS2Q15005 226 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 ZNF366Q8N895 744 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 ZCCHC3Q9NUD5 404 aaKnown RBP12.38□□□□□ -0.43
COL6A3-206ENST00000409809 ACSL6Q9UKU0 697 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 A0A0G2JN53 185 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 CASTOR2A6NHX0 329 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 MMP20O60882 483 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 ZDHHC14Q8IZN3 488 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 CNIH3Q8TBE1 160 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 ADAMTS14Q8WXS8 1223 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 SORCS1Q8WY21 1168 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 HOXB13Q92826 284 aaPredicted RBP12.38□□□□□ -0.43
COL6A3-206ENST00000409809 ZDHHC2Q9UIJ5 367 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 ZFR2Q9UPR6 939 aaKnown RBP12.38□□□□□ -0.43
COL6A3-206ENST00000409809 NAV1Q8NEY1 1877 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 PRNPP04156 253 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 TNFAIP8L2Q6P589 184 aaPredicted RBP12.38□□□□□ -0.43
COL6A3-206ENST00000409809 OR8S1Q8NH09 359 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 HCAR2Q8TDS4 363 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 HASPINQ8TF76 798 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 MYOZ2Q9NPC6 264 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 KCNIP2Q9NS61 270 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 FMO6PO60774 539 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 GGT1P19440 569 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 SNCAP37840 140 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 FCGRTP55899 365 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 FERD3LQ96RJ6 166 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 CYB5R1Q9UHQ9 305 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 BTBD17A6NE02 478 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 D6RAR5 112 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 UBFD1O14562 309 aaKnown RBP12.38□□□□□ -0.43
COL6A3-206ENST00000409809 AQP9O43315 295 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 NT5EP21589 574 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 HOXA9P31269 272 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 TMEM198Q66K66 360 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 KIAA1211LQ6NV74 962 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 KLHDC8BQ8IXV7 354 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 PXT1Q8NFP0 134 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 NIT2Q9NQR4 276 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 MAGEB4O15481 346 aaPredicted RBP12.38□□□□□ -0.43
COL6A3-206ENST00000409809 UNGP13051 313 aaPredicted RBP12.38□□□□□ -0.43
COL6A3-206ENST00000409809 TAS2R19P59542 299 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 SOHLH1Q5JUK2 328 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 ZNF440Q8IYI8 595 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 ZNF454Q8N9F8 522 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 OR2A12Q8NGT7 310 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 NANPQ8TBE9 248 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 FRS2Q8WU20 508 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 ABI3Q9P2A4 366 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 HRH3Q9Y5N1 445 aa12.38□□□□□ -0.43
COL6A3-206ENST00000409809 OTOFQ9HC10 1997 aa12.37□□□□□ -0.43
COL6A3-206ENST00000409809 TRBV2A0A0J9YWF9 115 aa12.37□□□□□ -0.43
COL6A3-206ENST00000409809 PSMD9O00233 223 aa12.37□□□□□ -0.43
COL6A3-206ENST00000409809 KDELC1Q6UW63 502 aa12.37□□□□□ -0.43
COL6A3-206ENST00000409809 C1orf87Q8N0U7 546 aa12.37□□□□□ -0.43
COL6A3-206ENST00000409809 CMASQ8NFW8 434 aaPredicted RBP12.37□□□□□ -0.43
COL6A3-206ENST00000409809 NTSR2O95665 410 aa12.37□□□□□ -0.43
COL6A3-206ENST00000409809 GAAP10253 952 aa12.37□□□□□ -0.43
COL6A3-206ENST00000409809 BTG1P62324 171 aa12.37□□□□□ -0.43
COL6A3-206ENST00000409809 IRF5Q13568 498 aa12.37□□□□□ -0.43
COL6A3-206ENST00000409809 OR6V1Q8N148 313 aa12.37□□□□□ -0.43
COL6A3-206ENST00000409809 SLC29A1Q99808 456 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms