RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 FOLR3P41439 243 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 STAT5AP42229 794 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 FRKP42685 505 aaPredicted RBP16.94■□□□□ 0.3
SDC1-203ENST00000403076 TRPC1P48995 793 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 DUSP2Q05923 314 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 COQ5Q5HYK3 327 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 C6orf163Q5TEZ5 329 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 DNAJC14Q6Y2X3 702 aaPredicted RBP16.94■□□□□ 0.3
SDC1-203ENST00000403076 ZNF621Q6ZSS3 439 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 GTF2H4Q92759 462 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 PPWD1Q96BP3 646 aaKnown RBP16.94■□□□□ 0.3
SDC1-203ENST00000403076 INPP5KQ9BT40 448 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 PNO1Q9NRX1 252 aaKnown RBP16.94■□□□□ 0.3
SDC1-203ENST00000403076 GID8Q9NWU2 228 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 TAS2R9Q9NYW1 312 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 CROTQ9UKG9 612 aa16.94■□□□□ 0.3
SDC1-203ENST00000403076 FARSAQ9Y285 508 aaKnown RBP16.94■□□□□ 0.3
SDC1-203ENST00000403076 B2RBV5 119 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 ALOX12BO75342 701 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 GSNP06396 782 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 T-ENOLP0DO92 83 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 PTGER1P34995 402 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 SOAT1P35610 550 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 DLSTP36957 453 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 NUDT2P50583 147 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 IGLV3-21P80748 117 aaPredicted RBP16.93■□□□□ 0.3
SDC1-203ENST00000403076 BNIP1Q12981 228 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 DNASE1L3Q13609 305 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 CEBPEQ15744 281 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 ST13P4Q8IZP2 240 aaPredicted RBP16.93■□□□□ 0.3
SDC1-203ENST00000403076 DPP10Q8N608 796 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 ADCY4Q8NFM4 1077 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 OR9A2Q8NGT5 310 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 SUN3Q8TAQ9 357 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 ZNF578Q96N58 590 aaPredicted RBP16.93■□□□□ 0.3
SDC1-203ENST00000403076 PELOQ9BRX2 385 aaKnown RBP16.93■□□□□ 0.3
SDC1-203ENST00000403076 SERHLQ9NQF3 203 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 VPS4AQ9UN37 437 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 MAN2B2Q9Y2E5 1009 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 SNX8Q9Y5X2 465 aa16.93■□□□□ 0.3
SDC1-203ENST00000403076 A8MUA0 341 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 C21orf140B9A014 251 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.92■□□□□ 0.3
SDC1-203ENST00000403076 ATP5HO75947 161 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 STT3AP46977 705 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 HBA1P69905 142 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 MLC1Q15049 377 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 ZSCAN26Q16670 478 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 SPDYE7PQ495Y7 208 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 DHDDSQ86SQ9 333 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 TMEM151BQ8IW70 566 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 OR2Y1Q8NGV0 311 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 NKD1Q969G9 470 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 MAGED4Q96JG8 741 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 NEUROD4Q9HD90 331 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 SEMA3GQ9NS98 782 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 SLAMF8Q9P0V8 285 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 MAP10Q9P2G4 905 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 ACSL6Q9UKU0 697 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 NEUROG3Q9Y4Z2 214 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 CLDN16Q9Y5I7 305 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 AHCTF1Q8WYP5 2266 aa16.92■□□□□ 0.3
SDC1-203ENST00000403076 A0A096LPI6 279 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 IGKV3D-11A0A0A0MRZ8 115 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 LOC101059948A0A1B0GTJ6 334 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 TCRBV16S1A1N1A0A5B0 115 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 SYNDIG1LA6NDD5 238 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 DYRK3O43781 588 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 ERN1O75460 977 aaKnown RBP16.91■□□□□ 0.3
SDC1-203ENST00000403076 KLF7O75840 302 aaPredicted RBP16.91■□□□□ 0.3
SDC1-203ENST00000403076 ATP1B1P05026 303 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 CDKN2CP42773 168 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 CDK9P50750 372 aaKnown RBP16.91■□□□□ 0.3
SDC1-203ENST00000403076 OR4D2P58180 307 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 LTB4RQ15722 352 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 TRMT5Q32P41 509 aaKnown RBP16.91■□□□□ 0.3
SDC1-203ENST00000403076 FAM69BQ5VUD6 431 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 LANCL3Q6ZV70 420 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 TRIML2Q8N7C3 387 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 DNAJB8Q8NHS0 232 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 DOK4Q8TEW6 326 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 KAT2AQ92830 837 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 RIT1Q92963 219 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 KIAA1143Q96AT1 154 aaPredicted RBP16.91■□□□□ 0.3
SDC1-203ENST00000403076 GPR87Q9BY21 358 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.91■□□□□ 0.3
SDC1-203ENST00000403076 C19orf25Q9UFG5 118 aaPredicted RBP16.91■□□□□ 0.3
SDC1-203ENST00000403076 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.91■□□□□ 0.3
SDC1-203ENST00000403076 KCND3Q9UK17 655 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 TCFL5Q9UL49 500 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 NPPAP01160 153 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 IGHEP01854 428 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 CYC1P08574 325 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 KRT16P08779 473 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 LIPCP11150 499 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 EFNA3P52797 238 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 RPS18P62269 152 aaKnown RBP16.91■□□□□ 0.3
SDC1-203ENST00000403076 TMEM107Q6UX40 140 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 SZRD1Q7Z422 152 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 GALNT12Q8IXK2 581 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms