RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 GLOD5A6NK44 160 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 PRAMEF2O60811 474 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 EPOP01588 193 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 ZNF8P17098 575 aaPredicted RBP11.36□□□□□ -0.59
SYNPO-202ENST00000394243 PARP16Q8N5Y8 322 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.36□□□□□ -0.59
SYNPO-202ENST00000394243 GIMAP5Q96F15 307 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 LURAP1Q96LR2 239 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 GNG13Q9P2W3 67 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 PCTPQ9UKL6 214 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 CFAP20Q9Y6A4 193 aaKnown RBP11.36□□□□□ -0.59
SYNPO-202ENST00000394243 PMM2O15305 246 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 RNF13O43567 381 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 CD3GP09693 182 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 GGT1P19440 569 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 CNR2P34972 360 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 MTNR1AP48039 350 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 KCNC1P48547 511 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 STC1P52823 247 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 MRPL41Q8IXM3 137 aaKnown RBP11.36□□□□□ -0.59
SYNPO-202ENST00000394243 OR56B2PQ8NGI1 322 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 OR51A7Q8NH64 312 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 PLD4Q96BZ4 506 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 THAP7Q9BT49 309 aaPredicted RBP11.36□□□□□ -0.59
SYNPO-202ENST00000394243 WASH6PQ9NQA3 447 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 PXDNQ92626 1479 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 RPS10-NUDT3A0A1W2PQS6 291 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 BEST1O76090 585 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 RPS17P08708 135 aaKnown RBP11.36□□□□□ -0.59
SYNPO-202ENST00000394243 CSKP41240 450 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 RPS10P46783 165 aaKnown RBP11.36□□□□□ -0.59
SYNPO-202ENST00000394243 GCGRP47871 477 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 GRIK2Q13002 908 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 TATDN3Q17R31 274 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 MRM3Q9HC36 420 aaKnown RBP11.36□□□□□ -0.59
SYNPO-202ENST00000394243 AIG1Q9NVV5 245 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 CLEC4EQ9ULY5 219 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 VWDEQ8N2E2 1590 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 IRAK2O43187 625 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 CHATP28329 748 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 ZNF136P52737 540 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 PGGT1BP53609 377 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 FAM83HQ6ZRV2 1179 aaPredicted RBP11.36□□□□□ -0.59
SYNPO-202ENST00000394243 OR13C3Q8NGS6 347 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 PROKR1Q8TCW9 393 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 PCNPQ8WW12 178 aaKnown RBP11.36□□□□□ -0.59
SYNPO-202ENST00000394243 POU2F3Q9UKI9 436 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 LSM5Q9Y4Y9 91 aaKnown RBP11.36□□□□□ -0.59
SYNPO-202ENST00000394243 HEBP2Q9Y5Z4 205 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 NME4O00746 187 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 ARPC1BO15143 372 aaKnown RBP11.35□□□□□ -0.59
SYNPO-202ENST00000394243 ARHGEF15O94989 841 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 CXCL14O95715 111 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 PDYNP01213 254 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 DCNP07585 359 aaKnown RBP11.35□□□□□ -0.59
SYNPO-202ENST00000394243 HSD17B1P14061 328 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 M6PRP20645 277 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 UNC50Q53HI1 259 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 CES4AQ5XG92 561 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 TMIGD1Q6UXZ0 262 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 GPR149Q86SP6 731 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 GALNT10Q86SR1 603 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 C12orf40Q86WS4 652 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 SCML2Q9UQR0 700 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 RIPK3Q9Y572 518 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 IGLV3-22A0A075B6J6 115 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 CASC3O15234 703 aaKnown RBP11.35□□□□□ -0.59
SYNPO-202ENST00000394243 COQ9O75208 318 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 RAD51DO75771 328 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 TPT1P13693 172 aaKnown RBP11.35□□□□□ -0.59
SYNPO-202ENST00000394243 RNF144AP50876 292 aaPredicted RBP11.35□□□□□ -0.59
SYNPO-202ENST00000394243 ACTA2P62736 377 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 RPS24P62847 133 aaKnown RBP11.35□□□□□ -0.59
SYNPO-202ENST00000394243 ACTG2P63267 376 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 GK3PQ14409 553 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 SPCS2Q15005 226 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 ZNF791Q3KP31 576 aaPredicted RBP11.35□□□□□ -0.59
SYNPO-202ENST00000394243 TWNKQ96RR1 684 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 EVA1BQ9NVM1 165 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 ASB4Q9Y574 426 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 CCL16O15467 120 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 AQP9O43315 295 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 CDK2P24941 298 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 AK4P27144 223 aaPredicted RBP11.35□□□□□ -0.59
SYNPO-202ENST00000394243 PAFAH1B3Q15102 231 aaKnown RBP11.35□□□□□ -0.59
SYNPO-202ENST00000394243 PROX2Q3B8N5 592 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 FLYWCH1Q4VC44 716 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 SSX9Q7RTT3 188 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 CHPT1Q8WUD6 406 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 KLK6Q92876 244 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 MED30Q96HR3 178 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 RAB11FIP5Q9BXF6 653 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 ACOT13Q9NPJ3 140 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 GPR52Q9Y2T5 361 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 AP1M2Q9Y6Q5 423 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 TMEM150CB9EJG8 249 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 TNFSF12O43508 249 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 CCL23P55773 120 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 ACTBP60709 375 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms