RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 FAM153BP0C7A2 387 aa20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 CCL3P10147 92 aa20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 ZNF791Q3KP31 576 aaPredicted RBP20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 FAM153CQ494X1 144 aa20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 NDUFAF5Q5TEU4 345 aa20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 ARHGAP11AQ6P4F7 1023 aa20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 RNF111Q6ZNA4 994 aa20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 GK5Q6ZS86 529 aa20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 NCCRP1Q6ZVX7 275 aaPredicted RBP20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 PAGE2Q7Z2X7 111 aa20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 LCA5Q86VQ0 697 aa20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 SLC22A16Q86VW1 577 aa20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 DEFB127Q9H1M4 99 aa20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 SH2D2AQ9NP31 389 aa20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 CHST11Q9NPF2 352 aa20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 FARSBQ9NSD9 589 aaKnown RBP20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 RYDENQ9NUL5 291 aaKnown RBP20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 ZNF225Q9UK10 706 aa20.05■□□□□ 0.8
CCDC28B-201ENST00000373602 FAM166BA8MTA8 275 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 PDYNP01213 254 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 CLPSP04118 112 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 P04436 131 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 TPOP07202 933 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 RHOXF2BP0C7M4 288 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 TSPAN8P19075 237 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 TAC1P20366 129 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 PIK3R1P27986 724 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 HSD17B3P37058 310 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 SLC37A1P57057 533 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 TEX35Q5T0J7 233 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 CCNYL2Q5T2Q4 361 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 PAOXQ6QHF9 649 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 C3P1Q6ZMU1 363 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 FAM47EQ6ZV65 393 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 SLC29A4Q7RTT9 530 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 CD163Q86VB7 1156 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 TRPC4APQ8TEL6 797 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 SELENOMQ8WWX9 145 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 SPACA9Q96E40 222 aaPredicted RBP20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 RHOXF2Q9BQY4 288 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 IL1RL2Q9HB29 575 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 FETUBQ9UGM5 382 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 TRPS1Q9UHF7 1281 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 SNX6Q9UNH7 406 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 SLC12A4Q9UP95 1085 aa20.04■□□□□ 0.8
CCDC28B-201ENST00000373602 A0A1W2PS29 197 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 OR6C76A6NM76 312 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 PDE9AO76083 593 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 DNASE1L1P49184 302 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 NR0B1P51843 470 aaKnown RBP20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 CLCQ05315 142 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 FOXO1Q12778 655 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 SLC29A2Q14542 456 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 EBPQ15125 230 aaKnown RBP20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 CDSNQ15517 529 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 UNC50Q53HI1 259 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 SLC22A10Q63ZE4 541 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 DND1Q8IYX4 353 aaKnown RBP20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 OR4K14Q8NGD5 310 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 GAL3ST4Q96RP7 486 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 WWTR1Q9GZV5 400 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 EPB41L4BQ9H329 900 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 CXorf21Q9HAI6 301 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 BRF2Q9HAW0 419 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 HRH3Q9Y5N1 445 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 TEX15Q9BXT5 2789 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 ITPR2Q14571 2701 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 EML6Q6ZMW3 1958 aa20.03■□□□□ 0.8
CCDC28B-201ENST00000373602 DLX3O60479 287 aa20.02■□□□□ 0.8
CCDC28B-201ENST00000373602 OR4F21O95013 312 aa20.02■□□□□ 0.8
CCDC28B-201ENST00000373602 CLDN14O95500 239 aa20.02■□□□□ 0.8
CCDC28B-201ENST00000373602 FBXO45P0C2W1 286 aa20.02■□□□□ 0.8
CCDC28B-201ENST00000373602 PRF1P14222 555 aa20.02■□□□□ 0.8
CCDC28B-201ENST00000373602 GALNT1Q10472 559 aaPredicted RBP20.02■□□□□ 0.8
CCDC28B-201ENST00000373602 HYAL4Q2M3T9 481 aa20.02■□□□□ 0.8
CCDC28B-201ENST00000373602 ZNF678Q5SXM1 525 aa20.02■□□□□ 0.8
CCDC28B-201ENST00000373602 COMMD6Q7Z4G1 85 aa20.02■□□□□ 0.8
CCDC28B-201ENST00000373602 CNPY4Q8N129 248 aa20.02■□□□□ 0.8
CCDC28B-201ENST00000373602 TMEM251Q8N6I4 163 aa20.02■□□□□ 0.8
CCDC28B-201ENST00000373602 ACMSDQ8TDX5 336 aa20.02■□□□□ 0.8
CCDC28B-201ENST00000373602 PAQR8Q8TEZ7 354 aa20.02■□□□□ 0.8
CCDC28B-201ENST00000373602 RUBCNLQ9H714 662 aa20.02■□□□□ 0.8
CCDC28B-201ENST00000373602 TUBA8Q9NY65 449 aaPredicted RBP20.02■□□□□ 0.8
CCDC28B-201ENST00000373602 PSMC3IPQ9P2W1 217 aaPredicted RBP20.02■□□□□ 0.8
CCDC28B-201ENST00000373602 CENPEQ02224 2701 aa20.02■□□□□ 0.79
CCDC28B-201ENST00000373602 GUCY1B2O75343 617 aa20.01■□□□□ 0.79
CCDC28B-201ENST00000373602 SUPT7LO94864 414 aa20.01■□□□□ 0.79
CCDC28B-201ENST00000373602 IGHG3P01860 377 aa20.01■□□□□ 0.79
CCDC28B-201ENST00000373602 SSTR4P31391 388 aa20.01■□□□□ 0.79
CCDC28B-201ENST00000373602 PIGAP37287 484 aa20.01■□□□□ 0.79
CCDC28B-201ENST00000373602 XKP51811 444 aa20.01■□□□□ 0.79
CCDC28B-201ENST00000373602 MAPK12P53778 367 aa20.01■□□□□ 0.79
CCDC28B-201ENST00000373602 FUT7Q11130 342 aa20.01■□□□□ 0.79
CCDC28B-201ENST00000373602 TBL3Q12788 808 aaKnown RBP20.01■□□□□ 0.79
CCDC28B-201ENST00000373602 RASA2Q15283 850 aa20.01■□□□□ 0.79
CCDC28B-201ENST00000373602 FAM219BQ5XKK7 198 aa20.01■□□□□ 0.79
CCDC28B-201ENST00000373602 GALNT12Q8IXK2 581 aa20.01■□□□□ 0.79
CCDC28B-201ENST00000373602 FAM109AQ8N4B1 249 aa20.01■□□□□ 0.79
CCDC28B-201ENST00000373602 ZNF441Q8N8Z8 693 aa20.01■□□□□ 0.79
CCDC28B-201ENST00000373602 TMEM237Q96Q45 408 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms