RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 CD300LGQ6UXG3 332 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 SFXN5Q8TD22 340 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 DCUN1D4Q92564 292 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 SLC2A11Q9BYW1 496 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 MAGEH1Q9H213 219 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 PRRC2BQ5JSZ5 2229 aaKnown RBP12.11□□□□□ -0.47
COL6A3-203ENST00000353578 CPED1A4D0V7 1026 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 E7ESA3 106 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 FABP1P07148 127 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 ADH1AP07327 375 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 HOXC12P31275 282 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 HNF4GQ14541 408 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 H3F3CQ6NXT2 135 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 CMTM1Q8IZ96 169 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 ZNF619Q8N2I2 560 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 CNIH3Q8TBE1 160 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 PROKR1Q8TCW9 393 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 HAS2Q92819 552 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 FAM46BQ96A09 425 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 KLHL13Q9P2N7 655 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 DKKL1Q9UK85 242 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 DHDHQ9UQ10 334 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 TMEM72A0PK05 275 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 PCDH7O60245 1069 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 EBLN1P0CF75 366 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 UQCRC2P22695 453 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 COMMD1Q8N668 190 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 ARL6IP6Q8N6S5 226 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 XYLBO75191 536 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 SNRPD2P62316 118 aaKnown RBP12.11□□□□□ -0.47
COL6A3-203ENST00000353578 IQCJQ1A5X6 159 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 TRMT10BQ6PF06 316 aaKnown RBP12.11□□□□□ -0.47
COL6A3-203ENST00000353578 XYLT1Q86Y38 959 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 NANPQ8TBE9 248 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 STT3BQ8TCJ2 826 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 DDCP20711 480 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 TAS2R46P59540 309 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 MLLT11Q13015 90 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-203ENST00000353578 CRTC1Q6UUV9 634 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 BRIX1Q8TDN6 353 aaKnown RBP12.11□□□□□ -0.47
COL6A3-203ENST00000353578 SLC32A1Q9H598 525 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 RANGRFQ9HD47 186 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-203ENST00000353578 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-203ENST00000353578 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-203ENST00000353578 SLC25A14O95258 325 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-203ENST00000353578 PTPRAP18433 802 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 GRIN3AQ8TCU5 1115 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 ST8SIA4Q92187 359 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 PINK1Q9BXM7 581 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 EXO1Q9UQ84 846 aaKnown RBP12.11□□□□□ -0.47
COL6A3-203ENST00000353578 ETV7Q9Y603 341 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 C3P01024 1663 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 ADRB2P07550 413 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 SPP1P10451 314 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 MAP2K4P45985 399 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 IL10RBQ08334 325 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 FAM196AQ6ZSG2 479 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 SUN3Q8TAQ9 357 aa12.11□□□□□ -0.47
COL6A3-203ENST00000353578 COL19A1Q14993 1142 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 TOMM20Q15388 145 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 ZNF585AQ6P3V2 769 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 ZFP90Q8TF47 636 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 ZDHHC1Q8WTX9 485 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 FCRL5Q96RD9 977 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 DNAJC27Q9NZQ0 273 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 PCTPQ9UKL6 214 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 FAM170BA6NMN3 283 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 HCKP08631 526 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 CRHBPP24387 322 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 GABRA5P31644 462 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 KIAA1324Q6UXG2 1013 aaKnown RBP12.1□□□□□ -0.47
COL6A3-203ENST00000353578 ADAD1Q96M93 576 aaKnown RBP12.1□□□□□ -0.47
COL6A3-203ENST00000353578 PTPRMP28827 1452 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 A0A1W2PQ09 198 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 UBFD1O14562 309 aaKnown RBP12.1□□□□□ -0.47
COL6A3-203ENST00000353578 ALDOBP05062 364 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 GAAP10253 952 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 ZNF41P51814 821 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-203ENST00000353578 KIAA1211LQ6NV74 962 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 SGPP2Q8IWX5 399 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 SPPL2BQ8TCT7 592 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 MICU1Q9BPX6 476 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 SLC25A21Q9BQT8 299 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-203ENST00000353578 ARHGAP39Q9C0H5 1083 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 TCRBV5S4A2TA0A5A2 114 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 HHLA1C9JL84 531 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 UBL3O95164 117 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 MT-ND4LP03901 98 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 POLR2HP52434 150 aaKnown RBP12.1□□□□□ -0.47
COL6A3-203ENST00000353578 HMGCS2P54868 508 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 GPRC5AQ8NFJ5 357 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 CASTOR1Q8WTX7 329 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 SRA1Q9HD15 236 aaKnown RBP12.1□□□□□ -0.47
COL6A3-203ENST00000353578 ARHGAP33O14559 1287 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 ELFN1P0C7U0 828 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 SCAPQ12770 1279 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 GPR139Q6DWJ6 353 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 RDH10Q8IZV5 341 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 OR5H2Q8NGV7 314 aa12.1□□□□□ -0.47
COL6A3-203ENST00000353578 ZNF417Q8TAU3 575 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms