RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ADRA2AP08913 450 aa18.33■□□□□ 0.52
COL9A3-201ENST00000343916 CNR2P34972 360 aa18.33■□□□□ 0.52
COL9A3-201ENST00000343916 PRKAG1P54619 331 aa18.33■□□□□ 0.52
COL9A3-201ENST00000343916 COL9A2Q14055 689 aaPredicted RBP18.33■□□□□ 0.52
COL9A3-201ENST00000343916 FBXL6Q8N531 539 aa18.33■□□□□ 0.52
COL9A3-201ENST00000343916 B3GNT7Q8NFL0 401 aa18.33■□□□□ 0.52
COL9A3-201ENST00000343916 OR8K5Q8NH50 307 aa18.33■□□□□ 0.52
COL9A3-201ENST00000343916 ZHX1-C8orf76Q96EF9 292 aa18.33■□□□□ 0.52
COL9A3-201ENST00000343916 VMP1Q96GC9 406 aa18.33■□□□□ 0.52
COL9A3-201ENST00000343916 MYADMQ96S97 322 aa18.33■□□□□ 0.52
COL9A3-201ENST00000343916 BTBD1Q9H0C5 482 aa18.33■□□□□ 0.52
COL9A3-201ENST00000343916 OR51I1Q9H343 314 aa18.33■□□□□ 0.52
COL9A3-201ENST00000343916 NT5DC2Q9H857 520 aa18.33■□□□□ 0.52
COL9A3-201ENST00000343916 SYNPO2LQ9H987 977 aa18.33■□□□□ 0.52
COL9A3-201ENST00000343916 KCNK12Q9HB15 430 aa18.33■□□□□ 0.52
COL9A3-201ENST00000343916 SEC14L3Q9UDX4 400 aa18.33■□□□□ 0.52
COL9A3-201ENST00000343916 FTSJ1Q9UET6 329 aa18.33■□□□□ 0.52
COL9A3-201ENST00000343916 WBP11Q9Y2W2 641 aaKnown RBP18.33■□□□□ 0.52
COL9A3-201ENST00000343916 A0A1W2PQU0 124 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 CLDN24A6NM45 220 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 LINC01565O15544 149 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 ERAL1O75616 437 aaKnown RBP18.32■□□□□ 0.52
COL9A3-201ENST00000343916 ADH1BP00325 375 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 ADORA3P0DMS8 318 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 GADD45AP24522 165 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 CLK1P49759 484 aaKnown RBP18.32■□□□□ 0.52
COL9A3-201ENST00000343916 EIF2B2P49770 351 aaKnown RBP18.32■□□□□ 0.52
COL9A3-201ENST00000343916 DMPKQ09013 629 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 ZNF846Q147U1 533 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 FRMPD2BQ6IN97 320 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 ZNF675Q8TD23 568 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 AMDHD1Q96NU7 426 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 HMG20AQ9NP66 347 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 SLC6A20Q9NP91 592 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 MRPS30Q9NP92 439 aaKnown RBP18.32■□□□□ 0.52
COL9A3-201ENST00000343916 C11orf16Q9NQ32 467 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 TRPC4Q9UBN4 977 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 A0A1W2PS29 197 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 KPNA4O00629 521 aaPredicted RBP18.32■□□□□ 0.52
COL9A3-201ENST00000343916 HAT1O14929 419 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 ERI3O43414 337 aaKnown RBP18.32■□□□□ 0.52
COL9A3-201ENST00000343916 AIREO43918 545 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 TPST2O60704 377 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 CLEC3AO75596 197 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 SERPINB1P30740 379 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 GRK5P34947 590 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 NCBP2P52298 156 aaKnown RBP eCLIP18.32■□□□□ 0.522e-8■■■□□ 16.2
COL9A3-201ENST00000343916 CRISP1P54107 249 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 CDC42P60953 191 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 ENPP2Q13822 863 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 AGERQ15109 404 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 GPR19Q15760 415 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 SOWAHCQ53LP3 525 aaPredicted RBP18.32■□□□□ 0.52
COL9A3-201ENST00000343916 TMEM145Q8NBT3 493 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 SLIRPQ9GZT3 109 aaKnown RBP18.32■□□□□ 0.52
COL9A3-201ENST00000343916 ZCCHC3Q9NUD5 404 aaKnown RBP18.32■□□□□ 0.52
COL9A3-201ENST00000343916 SPHK1Q9NYA1 384 aa18.32■□□□□ 0.52
COL9A3-201ENST00000343916 ZBTB32Q9Y2Y4 487 aaPredicted RBP18.32■□□□□ 0.52
COL9A3-201ENST00000343916 CEP290O15078 2479 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 ZAR1LA6NP61 321 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 GPR89AB7ZAQ6 455 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 PGRMC2O15173 223 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 GPR89BP0CG08 455 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 HSMCR30P0CW71 290 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 C8orf89P0DMQ9 161 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 BMP4P12644 408 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 ELAVL4P26378 380 aaKnown RBP18.31■□□□□ 0.52
COL9A3-201ENST00000343916 PKLRP30613 574 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 IGFALSP35858 605 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 HYAL2Q12891 473 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 FCGR1BQ92637 280 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 ABHD8Q96I13 439 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 IL4I1Q96RQ9 567 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 PSD2Q9BQI7 771 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 ROGDIQ9GZN7 287 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 PITHD1Q9GZP4 211 aaPredicted RBP18.31■□□□□ 0.52
COL9A3-201ENST00000343916 RNF167Q9H6Y7 350 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 SLC35C2Q9NQQ7 365 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 SEMA3GQ9NS98 782 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 ACSS1Q9NUB1 689 aaPredicted RBP18.31■□□□□ 0.52
COL9A3-201ENST00000343916 SCHIP1Q9P0W5 487 aaPredicted RBP18.31■□□□□ 0.52
COL9A3-201ENST00000343916 ADAM29Q9UKF5 820 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 MDC1Q14676 2089 aaKnown RBP18.31■□□□□ 0.52
COL9A3-201ENST00000343916 SLC31A1O15431 190 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 OR10H3O60404 316 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 KCNJ5P48544 419 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 RPS21P63220 83 aaKnown RBP18.31■□□□□ 0.52
COL9A3-201ENST00000343916 SLAMF1Q13291 335 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 PIN1Q13526 163 aaPredicted RBP18.31■□□□□ 0.52
COL9A3-201ENST00000343916 OXA1LQ15070 435 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 PTCHD4Q6ZW05 846 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 NATD1Q8N6N6 113 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 SLC17A9Q9BYT1 436 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 PBX4Q9BYU1 374 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 DCSTAMPQ9H295 470 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 ATG4BQ9Y4P1 393 aa18.31■□□□□ 0.52
COL9A3-201ENST00000343916 M0R3H8 397 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 NR2F1P10589 423 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 EIF2DP41214 584 aaKnown RBP18.3■□□□□ 0.52
COL9A3-201ENST00000343916 DUSP2Q05923 314 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms