RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TPRG1LQ5T0D9 272 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 ZNF793Q6ZN11 406 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 TRIM73Q86UV7 250 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 NRSN1Q8IZ57 195 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 OR4C15Q8NGM1 316 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 SMPDL3AQ92484 453 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 NUAK2Q9H093 628 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 CD93Q9NPY3 652 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 LHX9Q9NQ69 397 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 NECTIN3Q9NQS3 549 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 DPP7Q9UHL4 492 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 HCN2Q9UL51 889 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 ATG4BQ9Y4P1 393 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 DENND4CQ5VZ89 1909 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 CAPN5O15484 640 aaPredicted RBP15.76■□□□□ 0.11
VPS54-201ENST00000272322 EIF2S1P05198 315 aaKnown RBP15.76■□□□□ 0.11
VPS54-201ENST00000272322 TPTEP56180 551 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 CXCR4P61073 352 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 FCHO2Q0JRZ9 810 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 SLAMF1Q13291 335 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 LTB4RQ15722 352 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 LIPKQ5VXJ0 399 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 OR8H2Q8N162 312 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 FBXL6Q8N531 539 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 ZNF717Q9BY31 904 aaPredicted RBP15.76■□□□□ 0.11
VPS54-201ENST00000272322 PLA2G2FQ9BZM2 168 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 CRISPLD2Q9H0B8 497 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 GLIPR2Q9H4G4 154 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 SYNPO2LQ9H987 977 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 CNIH4Q9P003 139 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 YARS2Q9Y2Z4 477 aaKnown RBP15.76■□□□□ 0.11
VPS54-201ENST00000272322 DNMT3AQ9Y6K1 912 aaPredicted RBP15.76■□□□□ 0.11
VPS54-201ENST00000272322 C4orf51C9J302 202 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 TLR4O00206 839 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 CERS1P27544 350 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 S100A5P33763 92 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 GJA4P35212 333 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 DRD3P35462 400 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 TAS2R38P59533 333 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 MLF2Q15773 248 aaPredicted RBP15.75■□□□□ 0.11
VPS54-201ENST00000272322 FAM46CQ5VWP2 391 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 CASP12Q6UXS9 341 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 ASB16Q96NS5 453 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 MS4A8Q9BY19 250 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 WDR12Q9GZL7 423 aaKnown RBP15.75■□□□□ 0.11
VPS54-201ENST00000272322 ASCC3Q8N3C0 2202 aaKnown RBP15.75■□□□□ 0.11
VPS54-201ENST00000272322 TSPAN11A1L157 253 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 C1QTNF3-AMACRE9PGA6 284 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 DSCR3O14972 297 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 EFCAB14O75071 495 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 RPLP0P05388 317 aaKnown RBP15.75■□□□□ 0.11
VPS54-201ENST00000272322 EN2P19622 333 aaPredicted RBP15.75■□□□□ 0.11
VPS54-201ENST00000272322 XKP51811 444 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 FADDQ13158 208 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 TAB1Q15750 504 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 KIAA1211LQ6NV74 962 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 KIAA0907Q7Z7F0 614 aaPredicted RBP15.75■□□□□ 0.11
VPS54-201ENST00000272322 OR6T1Q8NGN1 323 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 CCL4L1Q8NHW4 92 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 IPCEF1Q8WWN9 437 aaPredicted RBP15.75■□□□□ 0.11
VPS54-201ENST00000272322 NACC2Q96BF6 587 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 CEP19Q96LK0 163 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 MKRN2Q9H000 416 aaKnown RBP15.75■□□□□ 0.11
VPS54-201ENST00000272322 CLN6Q9NWW5 311 aa15.75■□□□□ 0.11
VPS54-201ENST00000272322 CPSF4LA6NMK7 179 aaKnown RBP15.74■□□□□ 0.11
VPS54-201ENST00000272322 HMGN2P05204 90 aaKnown RBP15.74■□□□□ 0.11
VPS54-201ENST00000272322 EEF1A2Q05639 463 aaKnown RBP15.74■□□□□ 0.11
VPS54-201ENST00000272322 SGCGQ13326 291 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 FGL2Q14314 439 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 ZNF557Q8N988 423 aaPredicted RBP15.74■□□□□ 0.11
VPS54-201ENST00000272322 KCT2Q8NC54 265 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 OTUB2Q96DC9 234 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 ART5Q96L15 291 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 PITX2Q99697 317 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 EGLN3Q9H6Z9 239 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 PCDHGB1Q9Y5G3 927 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 SLC35F4A4IF30 521 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 H1F0P07305 194 aaKnown RBP15.74■□□□□ 0.11
VPS54-201ENST00000272322 SPNP16150 400 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 CD40LGP29965 261 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 GPM6BQ13491 265 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 IRF4Q15306 451 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 BCL7AQ4VC05 210 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 UBE3DQ7Z6J8 389 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 NUDT13Q86X67 352 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 YAF2Q8IY57 180 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 ZNF513Q8N8E2 541 aaPredicted RBP15.74■□□□□ 0.11
VPS54-201ENST00000272322 OR5K2Q8NHB8 316 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 SMARCD2Q92925 531 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 UBE2E3Q969T4 207 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 GPA33Q99795 319 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 GABARAPL3Q9BY60 117 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 MARK1Q9P0L2 795 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 MAFFQ9ULX9 164 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 ARHGAP33O14559 1287 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 MFN2O95140 757 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 RHCEP18577 417 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 GDI1P31150 447 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 PBX2P40425 430 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 PPM1FP49593 454 aaPredicted RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms