RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 RALGAPA1Q6GYQ0 2036 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 RNF103-CHMP3A0A140T963 221 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 TCRBV3S1A0A5B6 114 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 AQP12BA6NM10 295 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 ZNF749O43361 778 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 KCNK5O95279 499 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 KRT75O95678 551 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 NCK1P16333 377 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 SOX11P35716 441 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 CHI3L1P36222 383 aaPredicted RBP17.34■□□□□ 0.37
CLN3-254ENST00000637050 RHDQ02161 417 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 VAC14Q08AM6 782 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 RCN1Q15293 331 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 SAXO2Q658L1 398 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 CPZQ66K79 652 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 GLYATQ6IB77 296 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 SPATA24Q86W54 205 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 AQP12AQ8IXF9 295 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 NEURL3Q96EH8 262 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 MMABQ96EY8 250 aaPredicted RBP17.34■□□□□ 0.37
CLN3-254ENST00000637050 LRGUKQ96M69 825 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 SPATA9Q9BWV2 254 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 RAD21L1Q9H4I0 556 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 SEMA4GQ9NTN9 838 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 HCN3Q9P1Z3 774 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 NKX1-2Q9UD57 310 aaPredicted RBP17.34■□□□□ 0.37
CLN3-254ENST00000637050 CLCA2Q9UQC9 943 aa17.34■□□□□ 0.37
CLN3-254ENST00000637050 TMEM184BQ9Y519 407 aaPredicted RBP17.34■□□□□ 0.37
CLN3-254ENST00000637050 NUP214P35658 2090 aaPredicted RBP17.34■□□□□ 0.37
CLN3-254ENST00000637050 H0Y3Z8 333 aa17.33■□□□□ 0.37
CLN3-254ENST00000637050 XKP51811 444 aa17.33■□□□□ 0.37
CLN3-254ENST00000637050 ARSFP54793 590 aa17.33■□□□□ 0.37
CLN3-254ENST00000637050 MRPS22P82650 360 aaKnown RBP17.33■□□□□ 0.37
CLN3-254ENST00000637050 ZFP36L1Q07352 338 aaKnown RBP17.33■□□□□ 0.37
CLN3-254ENST00000637050 FADDQ13158 208 aa17.33■□□□□ 0.37
CLN3-254ENST00000637050 TRA2AQ13595 282 aaKnown RBP eCLIP17.33■□□□□ 0.37
CLN3-254ENST00000637050 SNCBQ16143 134 aa17.33■□□□□ 0.37
CLN3-254ENST00000637050 ADRM1Q16186 407 aa17.33■□□□□ 0.37
CLN3-254ENST00000637050 CYP51A1Q16850 503 aa17.33■□□□□ 0.37
CLN3-254ENST00000637050 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.33■□□□□ 0.37
CLN3-254ENST00000637050 TMEM64Q6YI46 380 aa17.33■□□□□ 0.37
CLN3-254ENST00000637050 TTLL10Q6ZVT0 673 aa17.33■□□□□ 0.37
CLN3-254ENST00000637050 SPPL2CQ8IUH8 684 aa17.33■□□□□ 0.37
CLN3-254ENST00000637050 LRRC25Q8N386 305 aaPredicted RBP17.33■□□□□ 0.37
CLN3-254ENST00000637050 PYDC1Q8WXC3 89 aa17.33■□□□□ 0.37
CLN3-254ENST00000637050 ATOH1Q92858 354 aaPredicted RBP17.33■□□□□ 0.37
CLN3-254ENST00000637050 NDC1Q9BTX1 674 aa17.33■□□□□ 0.37
CLN3-254ENST00000637050 TMEM9BQ9NQ34 198 aa17.33■□□□□ 0.37
CLN3-254ENST00000637050 SEMA3GQ9NS98 782 aa17.33■□□□□ 0.37
CLN3-254ENST00000637050 SIDT1Q9NXL6 827 aaKnown RBP17.33■□□□□ 0.37
CLN3-254ENST00000637050 GPR179Q6PRD1 2367 aa17.33■□□□□ 0.36
CLN3-254ENST00000637050 FRYLO94915 3013 aa17.33■□□□□ 0.36
CLN3-254ENST00000637050 BLACEA4D250 179 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 FGF17O60258 216 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 B4GALT2O60909 372 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 GPR75O95800 540 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 GPC1P35052 558 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 CCT3P49368 545 aaKnown RBP17.32■□□□□ 0.36
CLN3-254ENST00000637050 AP2B1P63010 937 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 MAT1AQ00266 395 aaKnown RBP17.32■□□□□ 0.36
CLN3-254ENST00000637050 FOLH1Q04609 750 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 CSRP2Q16527 193 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 COX20Q5RI15 118 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 PRAMEF17Q5VTA0 474 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 ERICH5Q6P6B1 374 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 PTOV1Q86YD1 416 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 NAXDQ8IW45 347 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 OR4N5Q8IXE1 308 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 ZZZ3Q8IYH5 903 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 GOLM1Q8NBJ4 401 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 ANKRD9Q96BM1 317 aaPredicted RBP17.32■□□□□ 0.36
CLN3-254ENST00000637050 DUS3LQ96G46 650 aaKnown RBP17.32■□□□□ 0.36
CLN3-254ENST00000637050 TMEM121BQ9BXQ6 578 aaPredicted RBP17.32■□□□□ 0.36
CLN3-254ENST00000637050 GORASP2Q9H8Y8 452 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 STX18Q9P2W9 335 aaKnown RBP17.32■□□□□ 0.36
CLN3-254ENST00000637050 H3BNX3 289 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 DSCR3O14972 297 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 GSTA4O15217 222 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 LRP3O75074 770 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 CBFA2T3O75081 653 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 LDB3O75112 727 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 TNFRSF21O75509 655 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 CPMP14384 443 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 PORP16435 677 aaPredicted RBP17.32■□□□□ 0.36
CLN3-254ENST00000637050 SYT16Q17RD7 645 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 VMACQ2NL98 169 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 SPDYE7PQ495Y7 208 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 PHF19Q5T6S3 580 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 ZFP1Q6P2D0 407 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 ANGPTL8Q6UXH0 198 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 RNF130Q86XS8 419 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 METTL27Q8N6F8 245 aaPredicted RBP17.32■□□□□ 0.36
CLN3-254ENST00000637050 OR9A2Q8NGT5 310 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 SFXN5Q8TD22 340 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 PEX11GQ96HA9 241 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 RSRC1Q96IZ7 334 aaKnown RBP17.32■□□□□ 0.36
CLN3-254ENST00000637050 DHCR7Q9UBM7 475 aaKnown RBP17.32■□□□□ 0.36
CLN3-254ENST00000637050 CDC14AQ9UNH5 594 aa17.32■□□□□ 0.36
CLN3-254ENST00000637050 TCRBV5S2A0A599 114 aa17.31■□□□□ 0.36
CLN3-254ENST00000637050 CXCR6O00574 342 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms